UCSF Pharmacogenetics of Membrane Transporters
Experiment View
NM_001650
NM_004028
XM_005258257
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Transcript:NM_001650 [Chr.18(-): 24432007-24445716 GRCh37]
Id:TBI_Exon_4
Position:Chr.18(-): 24440611-24441038 GRCh37
Chr.18(-): 22694609-22695036 NCBI36
Sequence:
CTGGCCTGAAGATGTTGTGTTTTACAGCAGTAGCTCTTTAGTATCCAGCCATGACTGTCCATTTTAGGTTATAATTTTTC
CAACTGCTCAATGAGAATGTTGATATAGCTGCTAATATCTTGAGGTTCCTCTAAGTGACAAATGACAGCAAATTGCAATG
AATGATACTTGCTAGTAGCCCTGTTTCAGCAATGTCTGAAGTTGTTTTCTTGTTTCCTATAGATCAATTATACTGGTGCC
AGCATGAATCCCGCCCGATCCTTTGGACCTGCAGTTATCATGGGAAATTGGGAAAACCATTGG
GTAACCCTCATATTGAT
AGTTCCCATCTTCCTACAGTTGAGGACAATTACCTGTGGGGCTCTTTTATTTTTCATTATTTTGCCTACTACTTTCTCTT
GCATTTCTCCAACCTTGACCCTCACTTT
Color Legend: SNP  UTR  CODING
Sample Sets: AQP4_TBI
Assays: AQP4-4
PMT impact: P - Public  D - Discovered  E - Exclusive  (dbSNP build 142)
Array availability: I - found on Illumina Human1M-Duo BeadChip (2011-04-21)  A - found on Affymetrix Genome-Wide SNP Array 6.0 (2011-06-21)  
FeaturePMT IDdbSNP/ PubMedArray AvailabilityGenomic PositionTranscript PositionCoding PositionNucleotide ChangeStrandAmino Acid PositionAmino Acid ChangeStatisticsSample Set
no variants

Transmembrane prediction:

Non-synonymous amino acid changes shown in red, indels (insertions and deletions) in blue, and synonymous changes in green. Exon(s) indicated by black outlines.