[Your browser is not displaying the SVG image of experimental data in gene context.] Transcript: NM_003742 [Chr.2(-): 169779449-169887833 GRCh37]
Id: ABCB11_exon4
Position: Chr.2(-): 169869707-169870067 GRCh37
Chr.2(-): 169577953-169578313 NCBI36
Sequence: TCCTGCTCTTCACCCATAGATGATCTCTGAACCCTTTGTTTTTCAAGTTTCGGTTTTCTTCAT C AACTGA C ATTTGGCTG ATGTTTGTGGGAAGTTTGTGTGCATTTCTCCATGGAATAGCCCAGCCAGGCGTGCTACTCATTTTTGGCACAATGACAGA TGTTTT T ATTGACTACGACGTTGAGTTACAAGAACTCCAGATTCCAGGAAAAGCATGTGTGAATAACACCATTGTATGGA CTAACAGTTCCCTCAACCAGAACATGACAAATGGAACACGTTGTGG GTAGGTTG TTTTTGTTTTTAATTTTTTACTTTTT TGCTCATATCTTAAATTGTAATTCAAAATGTATAGAGGGGA Color Legend: SNP UTR CODING
Sample Sets: Set-I
Assays: ABCB11_4_DHPLC ABCB11_4_PCR
SNP impact: P - Public D - Discovered E - Exclusive (dbSNP build 137)
SNP array availability: I - found on Illumina Human1M-Duo BeadChip (2011-04-21) A - found on Affymetrix Genome-Wide SNP Array 6.0 (2011-06-21)
Feature PMT SNP ID dbSNP/ PubMed SNP Array Availability Genomic Position Transcript Position Coding Position Nucleotide Change Strand, '+' or '-' Amino Acid Position Amino Acid Change Statistics AA Freq CA Freq AS Freq ME Freq PA Freq Sample Set
Exon 5: Coding 3289
P D E I A 169870004 GRCh37 169578250 NCBI36
293 167 TTTTTCAAGTTTCGGTTTTCTTCAT C → T AACTGACATTTGGCTGATGTTTGTG
- 56
Exon 5: Coding 3290
P D E I 169869997 GRCh37 169578243 NCBI36
300 174 AGTTTCGGTTTTCTTCATCAACTGA C → T ATTTGGCTGATGTTTGTGGGAAGTT
- 58
Exon 5: Coding 3291
P D E 5 pubs I A 169869901 GRCh37 169578147 NCBI36
396 270 TTTTTGGCACAATGACAGATGTTTT T → C ATTGACTACGACGTTGAGTTACAAG
- 90
3292
P D E 1 pub 169869774 GRCh37 169578020 NCBI36
AAATGGAACACGTTGTGGGTAGGTT G → A TTTTTGTTTTTAATTTTTTACTTTT
-
Transmembrane prediction: Non-synonymous amino acid changes shown in
red, indels (insertions and deletions) in
blue, and synonymous changes in
green . Exon(s) indicated by black outlines.