UCSF Pharmacogenetics of Membrane Transporters
Experiment View
NM_021082
NM_001145998
XM_005247722
XM_005247723
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Transcript:NM_021082 [Chr.3(+): 121613171-121663034 GRCh37]
Id:SLC15A2_exon9
Position:Chr.3(+): 121641561-121641779 GRCh37
Chr.3(+): 123124251-123124469 NCBI36
Sequence:
TGGAAAAGGCAGAGGATGTTTTTCTCTTTGTCTCTCCCATGATGTCTACTCTCTGCCCTAGTTTGCTATTTCCAATCGTT
TCAAGAACCGTTCTGGAGACATTCCAAAGCGACAGCACTGGCTAGACTGGGC
AGCTGAGAAATATCCAGTAAGTTGGAAA
TGCAGAAACATCTTATGGCTTGATAGAGTCTTTCCTAATGTTCAAAATGATTCTATCCT
Color Legend: SNP  UTR  CODING
Sample Sets: Set-I
Assays: SLC15A2_9_PCR
PMT impact: P - Public  D - Discovered  E - Exclusive  (dbSNP build 142)
Array availability: I - found on Illumina Human1M-Duo BeadChip (2011-04-21)  A - found on Affymetrix Genome-Wide SNP Array 6.0 (2011-06-21)  
FeaturePMT IDdbSNP/ PubMedArray AvailabilityGenomic PositionTranscript PositionCoding PositionNucleotide ChangeStrandAmino Acid PositionAmino Acid ChangeStatisticsAA FreqCA FreqAS FreqME FreqPA FreqSample Set
Exon 9: Coding
4064
PDE
I
121641693 GRCh37
123124383 NCBI36
1005852
AGCGACAGCACTGGCTAGACTGGGC A → G GCTGAGAAATATCCAGTAAGTTGGA
+284
Ala = Ala
n=
A/A=
A/G=
G/G=
G=
196
28
50
20
0.459
196
23
48
27
0.520
60
12
14
4
0.367
20
3
0
7
0.700
14
0
4
3
0.714
Set-I

Transmembrane prediction:

Non-synonymous amino acid changes shown in red, indels (insertions and deletions) in blue, and synonymous changes in green. Exon(s) indicated by black outlines.