Substrate In Vivo Evidence:
1. Largest ABC protein to date (5058 aa, 62 exons). 7p12.3 contains a locus associated with an inherited disorder affecting the pancreas and a locus involved in T-cell tumor invasion and metastasis. Prades, C et al. Cytogenet Genome Res 2002, 98(2-3):160-8 PMID 12697998.
2. Mouse Abca13 mRNA isolated from kidney. Analysis of promoter region revealed potential transcription factor binding sites associated with myeloid- and lymphoid-derived cell types. Gene 2003 Mar 27, 307:191-200 PMID 12706902.
Tissue Distribution Evidence:
1. Highest expression in human trachea, testis, and bone marrow. High expression also detected in leukemia, CNS tumor, and prostate tumor cell lines. Prades, C et al. Cytogenet Genome Res 2002, 98(2-3):160-8 PMID 12697998.
2. RNA dot blots showed that mouse Abca13 mRNA transcript levels were highest in mouse submaxillary gland, epididymus, ovary, and thymus. Barros, SA; Tennant, RW; Cannon RE. Gene 2003 Mar 27, 307:191-200 PMID 12706902.
The heat map summarizes relative expression by tissue type
at two levels of tissue detail, e.g., 'Brain' and 'Brain - Amygdala'.
Choose among four calculated expression values, including mean and median RPKM
values, and quantile normalized (QN) distributions of these values.
(Note that differences between some distributions are subtle.)
The coloring is relative to the mean of all displayed values.
All values are log base 2. (See also PMT GTEx Expression Plotting.)
Click on a transcript or tissue to resort the data.
Non-synonymous amino acid changes shown in red, indels (insertions and deletions) in blue, and synonymous changes in green. Exon(s) indicated by black outlines.
20141104 phase 3 variant call set of the 20130502 sequence freeze and alignments for SNPs and short indels (indels > 255 and structural variants are not included here). This variant set contains 2504 individuals from 26 populations (mouse over population column heading for population sizes). Showing gene variants in regions defined by NCBI RefSeq exons, putative promoter, and PMT resequencing assays. Note: Frequencies are calculated directly from reported genotypes and may vary from consensus frequencies reported by the 1000 Genomes project, which relied on additional data and the GATK tool Variant Quality Score Recalibrator.
dbSNP build 142.
Array availability: I - found on Illumina Human1M-Duo BeadChip (2011-04-21) A - found on Affymetrix Genome-Wide SNP Array 6.0 (2011-06-21)