UCSF Pharmacogenetics of Membrane Transporters
Gene View
Common Name:ABC10
HGNC Symbol:ABCA4
HGNC Description:ATP-binding cassette, sub-family A (ABC1), member 4
HGNC ID:34
Chromosome:Chr.1(-): 94230981-94359293
Location:1p22.1-p21
OMIM:601691
OMIM Phenotype:Startgardt disease 1; Macular degeneratons, age-related, 2; Retinitis pigmentosa 19; Cone-rod dystrophy 3; Fundus flavimaculatus
Accessions:AF000148,U88667
Nucleotide RefSeq:NM_000350
Protein RefSeq:NP_000341
Entrez:24
Isoforms:1
Evidence:Substrate In Vitro Evidence: 1. all-trans-retinal aldehyde - stimulation of ATPase activity of bovine ABCR - Sun H et al, JBC 1999: 8269-8281 Substrate In Vivo Evidence: 1. Stargardt Disease - Yatsenko AN et al, Human Mutation 2003: 636-644 2. Recessive Cone-Rod Dystrophy - Maugeri A et al, American Journal of Human Genetics 2000: 960-966 Tissue Distribution Evidence: Photoreceptors - IHC and Western Blot - Molday LL et al, Nature Genetics 2000: 257-8
Tissues:photoreceptors
Type:protein coding
Sets:0
PharmGKB ID:PA24379
HPRD ID:03408
Substrates:all-trans-retinal aldehyde
Trivial Names:FFM, RMP, ABCR, RP19, STGD, ABC10, ARMD2, CORD3, STGD1, FLJ17534, DKFZp781N1972
Transcripts:NM_000350 [Chr.1(-): 94230981-94359293]
ABCA4 Resequencing
[Your browser is not displaying the SVG image of experimental data in gene context.]
Study Name:ABCA4 Resequencing
Experiments:
SNP impact: P - Public  D - Discovered  E - Exclusive  (dbSNP build 130)
SNP array availability: I - found on Illumina Human1M-Duo BeadChip  A - found on Affymetrix Genome-Wide SNP Array 6.0  
FeaturePMT SNP IDdbSNP/ PubMedSNP Array AvailabilityGenomic PositionTranscript PositionCoding PositionNucleotide ChangeStrand, '+' or '-'Amino Acid PositionAmino Acid ChangeStatisticsAA FreqCA FreqAS FreqME FreqSample Set
 
4120
PDE
I94359702-409-513
GTGATCCCTCCCTCTTTTAGTCTTT C → T ATCTTGCTCCGTAATGACTGAAGTC
+ 
 
n=
C/C=
C/T=
T/T=
T=
132
42
23
1
0.189
136
68
0
0
0.000
130
64
1
0
0.008
132
63
3
0
0.023
PMT-272
Promoter
4119
PDE
 94359527-234-338
ATGAGAGGGGTTCCTGAGGGGGATG T → A CTTTAGGTATCTTTGACCTTAAGTT
+ 
 
n=
T/T=
T/A=
A/A=
A=
132
66
0
0
0.000
136
68
0
0
0.000
130
65
0
0
0.000
132
65
1
0
0.008
PMT-272
Promoter
4118
PDE
I94359478-185-289
TGAGGTGGGGGATGCAATGGGAAAC C → A AAGACCCTCAGGCACTCTCCTCCAT
+ 
 
n=
C/C=
C/A=
A/A=
A=
132
52
13
1
0.114
136
68
0
0
0.000
130
65
0
0
0.000
132
66
0
0
0.000
PMT-272
Promoter
4117
PDE
I94359432-139-243
GAGAAAGAGAACCCTAAAGACACAA G → A TGGCTGGGCACCAGGGAAATTGAGG
+ 
 
n=
G/G=
G/A=
A/A=
A=
132
52
13
1
0.114
136
68
0
0
0.000
130
65
0
0
0.000
132
66
0
0
0.000
PMT-272

Transmembrane prediction:

Non-synonymous amino acid changes shown in red, indels (insertions and deletions) in blue, and synonymous changes in green. Exon(s) indicated by black outlines.