UCSF Pharmacogenetics of Membrane Transporters
Gene View
Common Name:ABCA8
HGNC Symbol:ABCA8
HGNC Description:ATP-binding cassette, sub-family A (ABC1), member 8
HGNC ID:38
Chromosome:Chr.17(-): 64375025-64463128
Location:17q24
OMIM:
OMIM Phenotype:None
Accessions:NM_007168
Nucleotide RefSeq:NM_007168
Protein RefSeq:NP_009099
Entrez:10351
Isoforms:1
Evidence:Substrate In Vitro Evidence: Xenopus laevis oocytes. Tsuruoka S, et al. Biochem Biophys Res Commun. 2002; 298: 41-5. Estradiol-(-glucuronide KM = 30.4 uM LTC4 KM = 0.1 uM Taurocholate KM = 10.3 uM MS-209 Inhibited estradiol-(-glucuronide uptake MK-571 Inhibited estradiol-(-glucuronide uptake Ochratoxin A Inhibited estradiol-(-glucuronide uptake Tissue Distribution Evidence: Testis, Trachea >>> Uterus, Prostate 1. TaqMan RT-PCR. Langmann T, et al. Clinical Chemistry. 2003; 49: 230-8. Heart >> Skeletal muscle, liver 1. Northern Blot. Tsuruoka S, et al. Biochem Biophys Res Commun. 2002; 298: 41-5.
Tissues:Heart, Skeletal muscle, Testis, Trachea, Liver, Uterus, Prostate
Type:protein coding
Sets:V
PharmGKB ID:PA24383
HPRD ID:09790
Substrates:Estradiol-b-glucuronide, LTC4, Taurocholate, MS-209, MK571, Ochratoxin A
Trivial Names:KIAA0822, MGC163152
Transcripts:NM_007168 [Chr.17(-): 64375025-64463128]
ABCA8 Resequencing
[Your browser is not displaying the SVG image of experimental data in gene context.]
Study Name:ABCA8 Resequencing
Experiments:
SNP impact: P - Public  D - Discovered  E - Exclusive  (dbSNP build 130)
SNP array availability: I - found on Illumina Human1M-Duo BeadChip  A - found on Affymetrix Genome-Wide SNP Array 6.0  
FeaturePMT SNP IDdbSNP/ PubMedSNP Array AvailabilityGenomic PositionTranscript PositionCoding PositionNucleotide ChangeStrand, '+' or '-'Amino Acid PositionAmino Acid ChangeStatisticsAA FreqCA FreqAS FreqME FreqSample Set
 
4141
 64463598-470-13828
ACAAATTTGACATACAAAATATTTT T → C TCTGAGTATAATTGAACTCCTGATT
- 
 
n=
T/T=
T/C=
C/C=
C=
136
68
0
0
0.000
136
68
0
0
0.000
136
67
1
0
0.007
134
67
0
0
0.000
PMT-272
 
4142
 64463579-451-13809
TATTTTTTCTGAGTATAATTGAACT C → T CTGATTTAAAATTAAATCAATAACC
- 
 
n=
C/C=
C/T=
T/T=
T=
136
18
39
11
0.449
136
16
33
19
0.522
136
37
22
9
0.294
134
22
36
9
0.403
PMT-272
Promoter
4143
 64463278-150-13508
GCCACAATAATCTTGGACGTAAAAG A → G GAAATTGCTCCCTATAATATGATAT
- 
 
n=
A/A=
A/G=
G/G=
G=
136
66
2
0
0.015
136
68
0
0
0.000
136
68
0
0
0.000
134
67
0
0
0.000
PMT-272

Transmembrane prediction:

Non-synonymous amino acid changes shown in red, indels (insertions and deletions) in blue, and synonymous changes in green. Exon(s) indicated by black outlines.