UCSF Pharmacogenetics of Membrane Transporters
Gene View
Common Name:ABC14
HGNC Symbol:ABCB6
HGNC Description:ATP-binding cassette, sub-family B (MDR/TAP), member 6
HGNC ID:47
Chromosome:Chr.2(-): 219782738-219791916
Location:2q36
OMIM:605452
OMIM Phenotype:None
Accessions:AF070598,AJ289233
Nucleotide RefSeq:NM_005689
Protein RefSeq:NP_005680
Entrez:10058
Isoforms:1
Evidence:Substrate In Vitro Evidence: 1. Transient transfection of ABCB6 promoter constructs containing the luciferase gene resulted in an 1100-2300-fold increase compared to empty vector. Further experiments demonstrated that the promoter is orientation-dependent. Emadi-Konjin, HP et al. Biochim Biophys Acta 2002 Mar 19, 1574(2):117-30 PMID 11955620. Substrate In Vivo Evidence: 1. MTABC3 (mammalian mitochondrial ABC protein 3) is a half-transporter that transfer a precursor of the iron-sulfur cluster from mitochondria to the cytosol in yeast. The 2q36 region is within the candidate locus for lethal neonatal metabolic syndrome, a disorder of mitochondrial function associated with iron metabolism. Mitsuhashi, N et al. JBC 2000 Jun 9, 275(23):17536-40 PMID 10837493. 2. ABCB6 is not the causative gene for the growth retardation syndrome with amindoaciduria, cholestasis, iron overload, and lactacidosis (GRACILE). No mutations in the ABCB6 coding region were found, and expression level in fibroblasts were comparable between patients and controls. Vispaa, I et al. Am J Med Genet 2002 May 1, 109(3):202-5 PMID 11977179. Tissue Distribution Evidence: 1. Northern blots demonstrate that ABCB6 is expressed ubiquitously, but at low levels in normal human liver. ABCB6 is overexpressed in human hepatocellular carcinomas compared to paired surrounding non-malignant tissue. Emadi-Konjin, HP et al. Biochim Biophys Acta 2002 Mar 19, 1574(2):117-30 PMID 11955620.
Tissues:ubiquitous, hepatocellular carcinomas
Type:protein coding
Sets:0
PharmGKB ID:PA24388
HPRD ID:09261
Substrates:Fe/S cluster precursor
Trivial Names:ABC, PRP, umat, ABC14, MTABC3, EST45597, FLJ22414
Transcripts:NM_005689 [Chr.2(-): 219782738-219791916]
ABCB6 Resequencing
[Your browser is not displaying the SVG image of experimental data in gene context.]
Study Name:ABCB6 Resequencing
Experiments:
SNP impact: P - Public  D - Discovered  E - Exclusive  (dbSNP build 130)
SNP array availability: I - found on Illumina Human1M-Duo BeadChip  A - found on Affymetrix Genome-Wide SNP Array 6.0  
FeaturePMT SNP IDdbSNP/ PubMedSNP Array AvailabilityGenomic PositionTranscript PositionCoding PositionNucleotide ChangeStrand, '+' or '-'Amino Acid PositionAmino Acid ChangeStatisticsAA FreqCA FreqAS FreqME FreqSample Set
 
4219
I219792436-520-797
CGAGTTCGGGCAGCGCAATTCACCA C → T TCTCCCAAAGCCGGACCACAGCTGG
+ 
 
n=
C/C=
C/T=
T/T=
T=
132
66
0
0
0.000
134
67
0
0
0.000
136
67
1
0
0.007
132
66
0
0
0.000
PMT-272
 
4218
 219792434-518-795
TCCGAGTTCGGGCAGCGCAATTCAC C → T ACTCTCCCAAAGCCGGACCACAGCT
+ 
 
n=
C/C=
C/T=
T/T=
T=
132
65
1
0
0.008
134
67
0
0
0.000
136
68
0
0
0.000
132
66
0
0
0.000
PMT-272
 
4217
 219792327-411-688
TTTCTCTTGTTCCCAGGATTCTAGC C → T GCGCGAGACAACAAGAAGTCTGGTC
+ 
 
n=
C/C=
C/T=
T/T=
T=
132
66
0
0
0.000
134
66
1
0
0.007
136
68
0
0
0.000
132
66
0
0
0.000
PMT-272
 
4216
 219792247-331-608
CCGCCAGCCGCCTTGCTCAGCGTAT C → T TGAGCGACGGCCTAAACATACTTTC
+ 
 
n=
C/C=
C/T=
T/T=
T=
132
64
2
0
0.015
134
67
0
0
0.000
136
68
0
0
0.000
132
66
0
0
0.000
PMT-272
 
4215
 219792213-297-574
ACCTCCACGGAACTGTGGGTCGGAA G → A CTGCCCTTCCGCCAGCCGCCTTGCT
+ 
 
n=
G/G=
G/A=
A/A=
A=
132
66
0
0
0.000
134
67
0
0
0.000
136
68
0
0
0.000
132
65
1
0
0.008
PMT-272
Promoter
4214
I219792058-142-419
GCAGGCAACGAATGCAAATTAGAGA G → A GCAGAGCCGGCTTGGTCACGTGCCC
+ 
 
n=
G/G=
G/A=
A/A=
A=
132
57
9
0
0.068
134
67
0
0
0.000
136
68
0
0
0.000
132
66
0
0
0.000
PMT-272
Promoter
4213
 219791987-71-348
GCCCCGCCCACAGCCCCTACCCACG G → A CTCCCATTGGCCAAATGTCTCCGAG
+ 
 
n=
G/G=
G/A=
A/A=
A=
132
66
0
0
0.000
134
67
0
0
0.000
136
68
0
0
0.000
132
65
1
0
0.008
PMT-272
Promoter
4212
 219791949-33-310
TGCTCGGTGTTGGACTCGCACCGCG C → A TCCACGGCTGTAGCCCCGCCCACAG
+ 
 
n=
C/C=
C/A=
A/A=
A=
132
65
1
0
0.008
134
67
0
0
0.000
136
68
0
0
0.000
132
66
0
0
0.000
PMT-272

Transmembrane prediction:

Non-synonymous amino acid changes shown in red, indels (insertions and deletions) in blue, and synonymous changes in green. Exon(s) indicated by black outlines.