UCSF Pharmacogenetics of Membrane Transporters
Gene View
Common Name:ABC43
HGNC Symbol:ABCD3
HGNC Description:ATP-binding cassette, sub-family D (ALD), member 3
HGNC ID:67
Chromosome:Chr.1(+): 94656599-94756672
Location:1p22-p21
OMIM:170995
OMIM Phenotype:Zellweger syndrome 2
Accessions:M81182,X58528,X83467
Nucleotide RefSeq:NM_002858
Protein RefSeq:NP_002849
Entrez:5825
Isoforms:2
Evidence:Substrate In Vitro Evidence: 1. The interaction between peroxisomal ABC transporters with ATP was examined using rat liver peroxisomes. Findings suggested that ATP binds to PMP70 tightly in the absence of Mg2+. In the presence of Mg2+, the bound ATP is hydrolyzed to ADP, which is then dissociated from PMP70. ATP binding/hydrolysis by and the phosphorylation of PMP70 and ALDP are involved in the regulation of fatty acid transport into peroxisomes. Tanaka, AR et al. JBC 2002 Oct 18, 277(42):40142-7 PMID 12176987. 2. Co-IP demonstrated the heterodimerization of PMP70 with ALDRP (adrenoleukodystrophy related protein) or ALDP (adrenoleukodystrophy protein). Loss of ALDP dimerization may play a role in X-linked adrenoleukodystrophy pathogenesis (VLCFAs accumulate because of their impaired peroxisomal beta-oxidation). Liu, LX et al. JBC 1999 Nov 12, 274(46):32738-43 PMID 10551832. 3. Nucleotide-induced conformational changes of PMP70 were investigated by limited-trypsin digestion in rat liver peroxisomes. The results suggested that PMP70 exists as a dimer on the peroxisomal membranes and the binding and hydrolysis of ATP induce conformational changes in PMP70. Kashiwayama, Y et al. Biochem Biophys Res Comm 2002 Mar 15, 291(5):1245-51 PMID 11883951. Substrate In Vivo Evidence: 1. Zellweger syndrome (ZS) is an inborn error of peroxisome assembly. Two mutant PMP70 alleles in ZS probands suggest that PMP70 plays an important role in peroxisome biogenesis and that mutations in PMP70 may be responsible for a subset of ZS patients. Gartner, J; Moser, H; Valle, D. Nat Genet 1992 Apr, 1(1):16-23 PMID 1301993. Tissue Distribution Evidence: 1. Electron microscopy, immunocytochemistry, and 3D image reconstruction of peroxisomes and associated compartments in mouse dendritic cells demonstrated the presence of PMP70 in specialized subdomains of the ER that were continuous with a peroxisomal reticulum from which mature peroxisomes arose. Geuze, HJ et al. Mol Biol Cell 2003 Jul, 14(7):2900-7 PMID 12857873.
Tissues:endoplasmic reticulum
Type:protein coding
Sets:0
PharmGKB ID:PA24402
HPRD ID:01368
Substrates:binds ATP and is phosphorylated
Trivial Names:ABC43, PMP70, PXMP1
Transcripts:NM_002858 [Chr.1(+): 94656521-94756807]
NM_001122674 [Chr.1(+): 94656521-94716848]
ABCD3 Resequencing
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Study Name:ABCD3 Resequencing
Experiments:
SNP impact: P - Public  D - Discovered  E - Exclusive  (dbSNP build 130)
SNP array availability: I - found on Illumina Human1M-Duo BeadChip  A - found on Affymetrix Genome-Wide SNP Array 6.0  
FeaturePMT SNP IDdbSNP/ PubMedSNP Array AvailabilityGenomic PositionTranscript PositionCoding PositionNucleotide ChangeStrand, '+' or '-'Amino Acid PositionAmino Acid ChangeStatisticsAA FreqCA FreqAS FreqME FreqSample Set
Promoter
4315
PDE
 94656470-51-153
AGTACAAAGTGGGCTCCAGAGCGCG G → A GCGGCGCGGCGGCGCGAGCCAGGGG
+ 
 
n=
G/G=
G/A=
A/A=
A=
132
66
0
0
0.000
128
64
0
0
0.000
136
67
1
0
0.007
130
65
0
0
0.000
PMT-272
Promoter
4316
PDE
 94656502-19-121
CGGCGGCGCGAGCCAGGGGGCGGTC C → T TGCGCGGCCGGCCCCGCCCTCTGCT
+ 
 
n=
C/C=
C/T=
T/T=
T=
132
65
1
0
0.008
128
64
0
0
0.000
136
68
0
0
0.000
130
65
0
0
0.000
PMT-272
Exon: 5UTR
4317
 9465658363-40

C → CGCCGC, T
GTAAGGTAGCCGCCGCCGCCGCCGC C → CGCCGC GCCGCGTCCCCTCGCCGGCTCGCTG
GTAAGGTAGCCGCCGCCGCCGCCGC C → T GCCGCGTCCCCTCGCCGGCTCGCTG
+ 

 
 
 
n=
C/C=
C/CGCCGC=
CGCCGC/CGCCGC=
C/T=
T/T=
CGCCGC/T=
CGCCGC=
T=
132
61
5
0
0
0
0
0.038
0.000
128
55
2
0
7
0
0
0.016
0.055
136
45
2
0
16
5
0
0.015
0.191
130
57
2
0
5
1
0
0.015
0.054
PMT-272
Exon: 5UTR
4318
PDE
 9465658767-36
GGTAGCCGCCGCCGCCGCCGCCGCC G → T CGTCCCCTCGCCGGCTCGCTGGTAC
+ 
 
n=
G/G=
G/T=
T/T=
T=
132
60
5
1
0.053
128
64
0
0
0.000
136
68
0
0
0.000
130
65
0
0
0.000
PMT-272

Transmembrane prediction:

Non-synonymous amino acid changes shown in red, indels (insertions and deletions) in blue, and synonymous changes in green. Exon(s) indicated by black outlines.