UCSF Pharmacogenetics of Membrane Transporters
Gene View
Common Name:ABC38
HGNC Symbol:ABCE1
HGNC Description:ATP-binding cassette, sub-family E (OABP), member 1
HGNC ID:69
Chromosome:Chr.4(+): 146238606-146270126
Location:4q31
OMIM:601213
OMIM Phenotype:None
Accessions:X76388
Nucleotide RefSeq:NM_001040876
Protein RefSeq:NP_001035809
Entrez:6059
Isoforms:2
Evidence:Substrate In Vitro Evidence: 1. RLI (RNase L inhibitor) expression is not regulated by interferon action. RLI expression in reticulocyte extracts antagonizes the 2-5A binding ability and the nuclease activity of endogenous RNase L. The overexpression of RLI in HeLa cells inhibits IFN activity on encephalomyocarditis. RLI is the first described mediator of the 2-5A/RNase L pathway. Bisbal, C et al. JBC 1995 Jun 2, 270(22):13308-17 PMID 7539425. 2. RLI is induced during HIV-1 infection and downregulates the 2-5A/RNase L pathway in human T cells, leading to an increase in HIV replication. RLI antisense cDNA-expressing clones reverse the inhibition of RNase L activity and leads to a decrease in viral load. Martinand, C et al. J Virol 1999 Jan, 73(1):290-6 PMID 9847332. 3. RLI is transiently induced by dsRNA. Martinand, C et al. J Interferon Cytokine Res 1998 Dec, 18(12):1031-8 PMID 9877446. Tissue Distribution Evidence: 1. Northern blot shows ubiquitous expression of two transcript forms but differences in levels of expression suggest a tissue-specific regulation. Aubry, F et al. FEBS Lett 1996 Feb 26, 381(1-2):135-9 PMID 8641422.
Tissues:ubiquitous
Type:protein coding
Sets:0
PharmGKB ID:PA24404
HPRD ID:03132
Substrates:(RNase L inhibitor)
Trivial Names:RLI, OABP, ABC38, RNS4I, RNASEL1, RNASELI
Transcripts:NM_001040876 [Chr.4(+): 146238606-146270126]
NM_002940 [Chr.4(+): 146238606-146270126]
ABCE1 Resequencing
[Your browser is not displaying the SVG image of experimental data in gene context.]
Study Name:ABCE1 Resequencing
Experiments:
SNP impact: P - Public  D - Discovered  E - Exclusive  (dbSNP build 130)
SNP array availability: I - found on Illumina Human1M-Duo BeadChip  A - found on Affymetrix Genome-Wide SNP Array 6.0  
FeaturePMT SNP IDdbSNP/ PubMedSNP Array AvailabilityGenomic PositionTranscript PositionCoding PositionNucleotide ChangeStrand, '+' or '-'Amino Acid PositionAmino Acid ChangeStatisticsAA FreqCA FreqAS FreqME FreqSample Set
 
4171
 146238240-366-6775
TTAAACGCTCAATAAGTAATTTACT G → T AATGAATAAACAGATGAATAGGTTC
+ 
 
n=
G/G=
G/T=
T/T=
T=
124
59
3
0
0.024
98
49
0
0
0.000
124
62
0
0
0.000
116
58
0
0
0.000
PMT-272
 
4172
 146238269-337-6746
GAATAAACAGATGAATAGGTTCAGT C → T ATGAACTAGTTGTCACTTGCCTGCA
+ 
 
n=
C/C=
C/T=
T/T=
T=
124
59
3
0
0.024
98
49
0
0
0.000
124
62
0
0
0.000
116
58
0
0
0.000
PMT-272
Promoter
Exon: 5UTR
4173
 14623862116-6394
GCTCCACTCCTGACCCACCGGCCTT G → A AGGAAAGCGCAAACGTAAAAAAAGA
+ 
 
n=
G/G=
G/A=
A/A=
A=
124
61
1
0
0.008
98
49
0
0
0.000
124
62
0
0
0.000
116
58
0
0
0.000
PMT-272
Promoter
Exon: 5UTR
4174
 14623864035-6375
GGCCTTGAGGAAAGCGCAAACGTAA A → G AAAAGATTGAAACCGGAGAGGCGAA
+ 
 
n=
A/A=
A/G=
G/G=
G=
124
61
1
0
0.008
98
49
0
0
0.000
124
62
0
0
0.000
116
58
0
0
0.000
PMT-272

Transmembrane prediction: TOPO2 image is not available.