UCSF Pharmacogenetics of Membrane Transporters
Gene View
Common Name:CFTR
HGNC Symbol:CFTR
HGNC Description:cystic fibrosis transmembrane conductance regulator, ATP-binding cassette (sub-family C, member 7)
HGNC ID:1884
Chromosome:Chr.7(+): 116907253-117095955
Location:7q31.2
OMIM:602421
OMIM Phenotype:cystic fibrosis
Accessions:NM_000492
Nucleotide RefSeq:NM_000492
Protein RefSeq:NP_000483
Entrez:1080
Isoforms:1
Evidence:Substrate In Vitro Evidence: Anions (Cl-, NO3, SCN, H2SO4, etc.) Diphenylamine-2-carboxylic acid (DPC) - Blocks conductance Glibenclamide - Blocks conductance Tolbutamide - Blocks conductance Disulfonic stilbenes - Blocks conductance - Electrophysiology measurements with Xenopus oocytes, CHO cells and HEK293 cells. Dawson DC, et al. Physiol. Rev. 1999; 79: S47-75. 7,8-benzoflavones - Activator via direct interaction Pyrazolo derivatives - Activator via direct interaction - Fisher rat thyroid cells. Galietta LJ, et al. JBC. 2001 Jun 8; 276(23):19723-8. Tissue Distribution Evidence: Trachea > Testis, Prostate - TaqMan RT-PCR. Langmann T, et al. Clinical Chemistry. 2003; 49: 230-8.
Tissues:Trachea > Testis, Prostate
Type:protein coding
Sets:V
PharmGKB ID:PA109
HPRD ID:03883
Substrates:Anions, Diphenylamine-2-carboxylic acid (DPC), Glibenclamide, Tolbutamide, Disulfonic stilbenes, 7,8-benzoflavones, Pyrazolo derivatives
Trivial Names:CF, MRP7, ABC35, ABCC7, CFTR/MRP, TNR-CFTR, dJ760C5.1
Transcripts:NM_000492 [Chr.7(+): 116907253-117095955]
CFTR Resequencing
[Your browser is not displaying the SVG image of experimental data in gene context.]
Study Name:CFTR Resequencing
Experiments:
SNP impact: P - Public  D - Discovered  E - Exclusive  (dbSNP build 130)
SNP array availability: I - found on Illumina Human1M-Duo BeadChip  A - found on Affymetrix Genome-Wide SNP Array 6.0  
FeaturePMT SNP IDdbSNP/ PubMedSNP Array AvailabilityGenomic PositionTranscript PositionCoding PositionNucleotide ChangeStrand, '+' or '-'Amino Acid PositionAmino Acid ChangeStatisticsAA FreqCA FreqAS FreqME FreqSample Set
Promoter
4200
 116907097-156-288
GCGAAGGAGGAGAGGAGGAAGGAGC G → C GGAGGGGTGCTGGCGGGGGTGCGTA
+ 
 
n=
G/G=
G/C=
C/C=
C=
132
64
2
0
0.015
134
67
0
0
0.000
136
68
0
0
0.000
132
66
0
0
0.000
PMT-272
Promoter
4201
 116907102-151-283
GGAGGAGAGGAGGAAGGAGCGGGAG G → A GGTGCTGGCGGGGGTGCGTAGTGGG
+ 
 
n=
G/G=
G/A=
A/A=
A=
132
66
0
0
0.000
134
67
0
0
0.000
136
67
1
0
0.007
132
66
0
0
0.000
PMT-272
Promoter
4202
 116907111-142-274
GAGGAAGGAGCGGGAGGGGTGCTGG C → A GGGGGTGCGTAGTGGGTGGAGAAAG
+ 
 
n=
C/C=
C/A=
A/A=
A=
132
65
1
0
0.008
134
66
1
0
0.007
136
68
0
0
0.000
132
66
0
0
0.000
PMT-272
Promoter
4203
 116907159-94-226
AAGCCGCTAGAGCAAATTTGGGGCC G → T GACCAGGCAGCACTCGGCTTTTAAC
+ 
 
n=
G/G=
G/T=
T/T=
T=
132
63
3
0
0.023
134
67
0
0
0.000
136
68
0
0
0.000
132
66
0
0
0.000
PMT-272
Promoter
4204
 116907220-33-165
AAGGCGGGGGAAAGAGCAAAAGGAA G → A GGGTGGTGTGCGGAGTAGGGGTGGG
+ 
 
n=
G/G=
G/A=
A/A=
A=
132
66
0
0
0.000
134
67
0
0
0.000
136
68
0
0
0.000
132
65
1
0
0.008
PMT-272

Transmembrane prediction:

Non-synonymous amino acid changes shown in red, indels (insertions and deletions) in blue, and synonymous changes in green. Exon(s) indicated by black outlines.