UCSF Pharmacogenetics of Membrane Transporters
Gene View
Common Name:P3
HGNC Symbol:SLC10A3
HGNC Description:solute carrier family 10, member 3
HGNC ID:22979
Superfamily:SLC
Chromosome:Chr.X(-): 153715645-153719002 GRCh37
Location:Xq28
OMIM:312090
OMIM Phenotype:None
Accessions:X12458
Nucleotide RefSeq:NM_019848
Protein RefSeq:NP_062822
Entrez:8273
Ensembl:ENSG00000126903
Isoforms:9
Evidence:None
Tissues:None
Type:protein-coding
Sets:0
PharmGKB ID:PA134886398
HPRD ID:02418
Substrates:None
Trivial Names:P3, DXS253E
Transcripts:NM_001142391.1 [Chr.X(-): 153715650-153719002 GRCh37]
NM_001142392.1 [Chr.X(-): 153715650-153719002 GRCh37]
NM_019848.3 [Chr.X(-): 153715650-153719002 GRCh37]
XM_005274755.1 [Chr.X(-): 153715645-153718613 GRCh37]
XM_005274753.1 [Chr.X(-): 153715645-153718612 GRCh37]
XM_005274754.1 [Chr.X(-): 153715645-153718140 GRCh37]
XM_005277914.1 [Chr.X(-): 1921285-1924253 GRCh37]
XM_005277912.1 [Chr.X(-): 1921285-1924252 GRCh37]
XM_005277913.1 [Chr.X(-): 1921285-1923455 GRCh37]
ENST00000263512 [Chr.X(-): 153715652-153719002 GRCh37]
ENST00000369649 [Chr.X(-): 153715645-153718953 GRCh37]
ENST00000393586 [Chr.X(-): 153715650-153718967 GRCh37]
ENST00000393587 [Chr.X(-): 153715682-153719002 GRCh37]
ENST00000453912 [Chr.X(-): 153716626-153719016 GRCh37]
Annotation History:View Events (53)

GTEx Expression by Gene and Transcript

The heat map summarizes relative expression by tissue type at two levels of tissue detail, e.g., 'Brain' and 'Brain - Amygdala'. Choose among four calculated expression values, including mean and median RPKM values, and quantile normalized (QN) distributions of these values. (Note that differences between some distributions are subtle.) The coloring is relative to the mean of all displayed values. All values are log base 2. (See also PMT GTEx Expression Plotting.) Click on a transcript or tissue to resort the data.

Tissues:
Expression values:
No expression data exists for SLC10A3.

Variant Data

View all PMT variants for SLC10A3 on UCSC Genome Browser
Showing SNP features for transcript:   
1000 Genomes  

20141104 phase 3 variant call set of the 20130502 sequence freeze and alignments for SNPs and short indels (indels > 255 and structural variants are not included here). This variant set contains 2504 individuals from 26 populations (mouse over population column heading for population sizes).
Showing gene variants in regions defined by NCBI RefSeq exons, putative promoter, and PMT resequencing assays.
Note: Frequencies are calculated directly from reported genotypes and may vary from consensus frequencies reported by the 1000 Genomes project, which relied on additional data and the GATK tool Variant Quality Score Recalibrator.
dbSNP build 142.
Array availability: I - found on Illumina Human1M-Duo BeadChip (2011-04-21)  A - found on Affymetrix Genome-Wide SNP Array 6.0 (2011-06-21)  
Download the SNP table data as a tab-delimited file.

Transmembrane prediction: TOPO2 image is not available.