UCSF Pharmacogenetics of Membrane Transporters
Gene View
Common Name:BSC
HGNC Symbol:SLC12A2
HGNC Description:solute carrier family 12 (sodium/potassium/chloride transporter), member 2
HGNC ID:10911
Superfamily:SLC
Chromosome:Chr.5(+): 127419483-127525380 GRCh37
Location:5q23.3
OMIM:600840
OMIM Phenotype:None
Accessions:AA425438,AA425619,AA843086,AI493213,AK025062,AV708
Nucleotide RefSeq:NM_001046
Protein RefSeq:NP_001037
Entrez:6558
Ensembl:ENSG00000064651
Isoforms:2
Evidence:None
Tissues:None
Type:protein-coding
Sets:0
PharmGKB ID:PA35806
HPRD ID:06775
Substrates:None
Trivial Names:BSC, BSC2, NKCC1
Transcripts:NM_001046.2 [Chr.5(+): 127419483-127525380 GRCh37]
NM_001256461.1 [Chr.5(+): 127419483-127525380 GRCh37]
ENST00000262461 [Chr.5(+): 127419458-127525380 GRCh37]
ENST00000343225 [Chr.5(+): 127419540-127524134 GRCh37]
ENST00000502849 [Chr.5(+): 127514072-127518613 GRCh37]
ENST00000504416 [Chr.5(+): 127493680-127506787 GRCh37]
ENST00000507791 [Chr.5(+): 127513241-127520199 GRCh37]
ENST00000509205 [Chr.5(+): 127419483-127522717 GRCh37]
ENST00000509616 [Chr.5(+): 127493741-127507574 GRCh37]
Annotation History:View Events (11)

GTEx Expression by Gene and Transcript

The heat map summarizes relative expression by tissue type at two levels of tissue detail, e.g., 'Brain' and 'Brain - Amygdala'. Choose among four calculated expression values, including mean and median RPKM values, and quantile normalized (QN) distributions of these values. (Note that differences between some distributions are subtle.) The coloring is relative to the mean of all displayed values. All values are log base 2. (See also PMT GTEx Expression Plotting.) Click on a transcript or tissue to resort the data.

Tissues:
Expression values:
No expression data exists for SLC12A2.

Variant Data

View all PMT variants for SLC12A2 on UCSC Genome Browser
Showing SNP features for transcript:   
1000 Genomes  

20141104 phase 3 variant call set of the 20130502 sequence freeze and alignments for SNPs and short indels (indels > 255 and structural variants are not included here). This variant set contains 2504 individuals from 26 populations (mouse over population column heading for population sizes).
Showing gene variants in regions defined by NCBI RefSeq exons, putative promoter, and PMT resequencing assays.
Note: Frequencies are calculated directly from reported genotypes and may vary from consensus frequencies reported by the 1000 Genomes project, which relied on additional data and the GATK tool Variant Quality Score Recalibrator.
dbSNP build 142.
Array availability: I - found on Illumina Human1M-Duo BeadChip (2011-04-21)  A - found on Affymetrix Genome-Wide SNP Array 6.0 (2011-06-21)  
Download the SNP table data as a tab-delimited file.

Transmembrane prediction:

Non-synonymous amino acid changes shown in red, indels (insertions and deletions) in blue, and synonymous changes in green. Exon(s) indicated by black outlines.