UCSF Pharmacogenetics of Membrane Transporters
Gene View
Common Name:SLC15A3
HGNC Symbol:SLC15A3
HGNC Description:solute carrier family 15 (oligopeptide transporter), member 3
HGNC ID:18068
Superfamily:SLC
Chromosome:Chr.11(-): 60704555-60719257 GRCh37
Location:11q12.2
OMIM:610408
OMIM Phenotype:None
Accessions:NM_016582
Nucleotide RefSeq:NM_016582
Protein RefSeq:NP_057666
Entrez:51296
Ensembl:ENSG00000110446
Isoforms:1
Evidence:None
Tissues:None
Type:protein-coding
Sets:V
PharmGKB ID:PA134919658
HPRD ID:11565
Substrates:None
Trivial Names:OCTP, PHT2, PTR3
Transcripts:NM_016582.2 [Chr.11(-): 60704555-60719257 GRCh37]
ENST00000227880 [Chr.11(-): 60704556-60719257 GRCh37]
ENST00000536491 [Chr.11(-): 60708681-60715291 GRCh37]
ENST00000536784 [Chr.11(-): 60704556-60705456 GRCh37]
ENST00000537307 [Chr.11(-): 60704633-60711264 GRCh37]
ENST00000538739 [Chr.11(-): 60714006-60720002 GRCh37]
ENST00000540272 [Chr.11(-): 60710978-60714238 GRCh37]
ENST00000541505 [Chr.11(-): 60704556-60719118 GRCh37]
ENST00000543406 [Chr.11(-): 60704563-60711091 GRCh37]
ENST00000544101 [Chr.11(-): 60704560-60705604 GRCh37]
Annotation History:View Events (2)

GTEx Expression by Gene and Transcript

The heat map summarizes relative expression by tissue type at two levels of tissue detail, e.g., 'Brain' and 'Brain - Amygdala'. Choose among four calculated expression values, including mean and median RPKM values, and quantile normalized (QN) distributions of these values. (Note that differences between some distributions are subtle.) The coloring is relative to the mean of all displayed values. All values are log base 2. (See also PMT GTEx Expression Plotting.) Click on a transcript or tissue to resort the data.

Tissues:
Expression values:
No expression data exists for SLC15A3.

Variant Data

View all PMT variants for SLC15A3 on UCSC Genome Browser
Showing SNP features for transcript: NM_016582  
1000 Genomes  

20141104 phase 3 variant call set of the 20130502 sequence freeze and alignments for SNPs and short indels (indels > 255 and structural variants are not included here). This variant set contains 2504 individuals from 26 populations (mouse over population column heading for population sizes).
Showing gene variants in regions defined by NCBI RefSeq exons, putative promoter, and PMT resequencing assays.
Note: Frequencies are calculated directly from reported genotypes and may vary from consensus frequencies reported by the 1000 Genomes project, which relied on additional data and the GATK tool Variant Quality Score Recalibrator.
dbSNP build 142.
Array availability: I - found on Illumina Human1M-Duo BeadChip (2011-04-21)  A - found on Affymetrix Genome-Wide SNP Array 6.0 (2011-06-21)  
Download the SNP table data as a tab-delimited file.

Transmembrane prediction: TOPO2 image is not available.