UCSF Pharmacogenetics of Membrane Transporters
Gene View
Common Name:SLC15A4
HGNC Symbol:SLC15A4
HGNC Description:solute carrier family 15 (oligopeptide transporter), member 4
HGNC ID:23090
Superfamily:SLC
Chromosome:Chr.12(-): 129277739-129308541 GRCh37
Location:12q24.32
OMIM:
OMIM Phenotype:None
Accessions:NM_145648
Nucleotide RefSeq:NM_145648
Protein RefSeq:NP_663623
Entrez:121260
Ensembl:ENSG00000139370
Isoforms:1
Evidence:None
Tissues:None
Type:protein-coding
Sets:V
PharmGKB ID:PA134928948
HPRD ID:
Substrates:None
Trivial Names:PHT1, PTR4, FP12591
Transcripts:NM_145648.3 [Chr.12(-): 129277739-129308541 GRCh37]
ENST00000266771 [Chr.12(-): 129277739-129308528 GRCh37]
ENST00000366292 [Chr.12(-): 129285352-129300473 GRCh37]
ENST00000376740 [Chr.12(-): 129293351-129308067 GRCh37]
ENST00000376744 [Chr.12(-): 129277740-129308324 GRCh37]
ENST00000535272 [Chr.12(-): 129299505-129304412 GRCh37]
ENST00000539703 [Chr.12(-): 129293626-129308138 GRCh37]
ENST00000544112 [Chr.12(-): 129278718-129294903 GRCh37]
ENST00000545031 [Chr.12(-): 129278440-129286246 GRCh37]
Annotation History:View Events (2)

GTEx Expression by Gene and Transcript

The heat map summarizes relative expression by tissue type at two levels of tissue detail, e.g., 'Brain' and 'Brain - Amygdala'. Choose among four calculated expression values, including mean and median RPKM values, and quantile normalized (QN) distributions of these values. (Note that differences between some distributions are subtle.) The coloring is relative to the mean of all displayed values. All values are log base 2. (See also PMT GTEx Expression Plotting.) Click on a transcript or tissue to resort the data.

Tissues:
Expression values:
No expression data exists for SLC15A4.

Variant Data

View all PMT variants for SLC15A4 on UCSC Genome Browser
Showing SNP features for transcript: NM_145648  
1000 Genomes  

20141104 phase 3 variant call set of the 20130502 sequence freeze and alignments for SNPs and short indels (indels > 255 and structural variants are not included here). This variant set contains 2504 individuals from 26 populations (mouse over population column heading for population sizes).
Showing gene variants in regions defined by NCBI RefSeq exons, putative promoter, and PMT resequencing assays.
Note: Frequencies are calculated directly from reported genotypes and may vary from consensus frequencies reported by the 1000 Genomes project, which relied on additional data and the GATK tool Variant Quality Score Recalibrator.
dbSNP build 142.
Array availability: I - found on Illumina Human1M-Duo BeadChip (2011-04-21)  A - found on Affymetrix Genome-Wide SNP Array 6.0 (2011-06-21)  
Download the SNP table data as a tab-delimited file.

Transmembrane prediction: TOPO2 image is not available.