UCSF Pharmacogenetics of Membrane Transporters
Gene View
Common Name:SLC20A2
HGNC Symbol:SLC20A2
HGNC Description:solute carrier family 20 (phosphate transporter), member 2
HGNC ID:10947
Superfamily:SLC
Chromosome:Chr.8(-): 42273980-42397356 GRCh37
Location:8p11.21
OMIM:158378
OMIM Phenotype:None
Accessions:NM_006749
Nucleotide RefSeq:NM_006749
Protein RefSeq:NP_006740
Entrez:6575
Ensembl:ENSG00000168575
Isoforms:6
Evidence:Substrate In Vitro Evidence: Pi ions (mouse) 2 X oocytes Tissue Distribution Evidence: intestine, kidney, heart, liver, brain, testis, and skin (mouse) 2 Northern
Tissues:intestine, kidney, heart, liver, brain, testis, and skin
Type:protein-coding
Sets:V
PharmGKB ID:PA35834
HPRD ID:08865
Substrates:Pi ions
Trivial Names:PIT2, RAM1, GLVR2, IBGC1, IBGC3, MLVAR, PIT-2, GLVR-2
Transcripts:NM_006749.4 [Chr.8(-): 42273980-42397356 GRCh37]
NM_001257181.1 [Chr.8(-): 42273980-42396655 GRCh37]
NM_001257180.1 [Chr.8(-): 42273980-42358978 GRCh37]
XM_005273614.1 [Chr.8(-): 42273993-42397286 GRCh37]
XM_005273613.1 [Chr.8(-): 42273993-42396848 GRCh37]
XM_005273615.1 [Chr.8(-): 42275403-42396848 GRCh37]
ENST00000342228 [Chr.8(-): 42273993-42397069 GRCh37]
ENST00000517366 [Chr.8(-): 42329697-42358761 GRCh37]
ENST00000518384 [Chr.8(-): 42329824-42396724 GRCh37]
ENST00000518660 [Chr.8(-): 42294993-42320889 GRCh37]
ENST00000518717 [Chr.8(-): 42329675-42396197 GRCh37]
ENST00000519463 [Chr.8(-): 42390330-42391736 GRCh37]
ENST00000520179 [Chr.8(-): 42275321-42396655 GRCh37]
ENST00000520262 [Chr.8(-): 42274982-42358978 GRCh37]
ENST00000521455 [Chr.8(-): 42391498-42396351 GRCh37]
ENST00000522401 [Chr.8(-): 42296985-42317686 GRCh37]
ENST00000522707 [Chr.8(-): 42329767-42360146 GRCh37]
ENST00000523340 [Chr.8(-): 42389803-42396646 GRCh37]
ENST00000524211 [Chr.8(-): 42320596-42390139 GRCh37]
ENST00000524237 [Chr.8(-): 42329857-42396854 GRCh37]
Annotation History:View Events (50)

GTEx Expression by Gene and Transcript

The heat map summarizes relative expression by tissue type at two levels of tissue detail, e.g., 'Brain' and 'Brain - Amygdala'. Choose among four calculated expression values, including mean and median RPKM values, and quantile normalized (QN) distributions of these values. (Note that differences between some distributions are subtle.) The coloring is relative to the mean of all displayed values. All values are log base 2. (See also PMT GTEx Expression Plotting.) Click on a transcript or tissue to resort the data.

Tissues:
Expression values:
No expression data exists for SLC20A2.

Variant Data

View all PMT variants for SLC20A2 on UCSC Genome Browser
Showing SNP features for transcript:   
1000 Genomes  

20141104 phase 3 variant call set of the 20130502 sequence freeze and alignments for SNPs and short indels (indels > 255 and structural variants are not included here). This variant set contains 2504 individuals from 26 populations (mouse over population column heading for population sizes).
Showing gene variants in regions defined by NCBI RefSeq exons, putative promoter, and PMT resequencing assays.
Note: Frequencies are calculated directly from reported genotypes and may vary from consensus frequencies reported by the 1000 Genomes project, which relied on additional data and the GATK tool Variant Quality Score Recalibrator.
dbSNP build 142.
Array availability: I - found on Illumina Human1M-Duo BeadChip (2011-04-21)  A - found on Affymetrix Genome-Wide SNP Array 6.0 (2011-06-21)  
Download the SNP table data as a tab-delimited file.

Transmembrane prediction:

Non-synonymous amino acid changes shown in red, indels (insertions and deletions) in blue, and synonymous changes in green. Exon(s) indicated by black outlines.