UCSF Pharmacogenetics of Membrane Transporters
Gene View
Common Name:SVCT3
HGNC Symbol:SLC23A3
HGNC Description:solute carrier family 23, member 3
HGNC ID:20601
Chromosome:Chr.2(-): 220026181-220035549 GRCh37
OMIM Phenotype:None
Nucleotide RefSeq:NM_144712
Protein RefSeq:NP_653313
Evidence:Substrate In Vitro Evidence: Does not transport traditional SLC23A1 or SLC23A2 substrates - Takanaga H, et al. Pflugers Archive. 2003 (Epub).
Tissues:No data
PharmGKB ID:PA134932069
HPRD ID:15350
Substrates:No data
Trivial Names:E2BP3, SVCT3, Yspl1
Transcripts:NM_144712.4 [Chr.2(-): 220026181-220034817 GRCh37]
NM_001144889.1 [Chr.2(-): 220026181-220034817 GRCh37]
NM_001144890.1 [Chr.2(-): 220026181-220034817 GRCh37]
XM_005246351.1 [Chr.2(-): 220026181-220035549 GRCh37]
ENST00000295738 [Chr.2(-): 220026187-220034817 GRCh37]
ENST00000318673 [Chr.2(-): 219940695-220034709 GRCh37]
ENST00000396775 [Chr.2(-): 220026181-220034817 GRCh37]
ENST00000409370 [Chr.2(-): 220032936-220034712 GRCh37]
ENST00000409878 [Chr.2(-): 220026487-220034739 GRCh37]
ENST00000414999 [Chr.2(-): 220032651-220034284 GRCh37]
ENST00000421779 [Chr.2(-): 220033506-220034757 GRCh37]
ENST00000430764 [Chr.2(-): 220033374-220034726 GRCh37]
ENST00000455516 [Chr.2(-): 220026488-220034754 GRCh37]
ENST00000461812 [Chr.2(-): 220034077-220034751 GRCh37]
ENST00000465580 [Chr.2(-): 220033359-220034755 GRCh37]
ENST00000497918 [Chr.2(-): 220029300-220034779 GRCh37]
ENST00000498327 [Chr.2(-): 219940051-220035549 GRCh37]
Annotation History:View Events (13)

GTEx Expression by Gene and Transcript

The heat map summarizes relative expression by tissue type at two levels of tissue detail, e.g., 'Brain' and 'Brain - Amygdala'. Choose among four calculated expression values, including mean and median RPKM values, and quantile normalized (QN) distributions of these values. (Note that differences between some distributions are subtle.) The coloring is relative to the mean of all displayed values. All values are log base 2. (See also PMT GTEx Expression Plotting.) Click on a transcript or tissue to resort the data.

Expression values:
No expression data exists for SLC23A3.

Variant Data

View all PMT variants for SLC23A3 on UCSC Genome Browser
Showing SNP features for transcript:   
1000 Genomes  

20141104 phase 3 variant call set of the 20130502 sequence freeze and alignments for SNPs and short indels (indels > 255 and structural variants are not included here). This variant set contains 2504 individuals from 26 populations (mouse over population column heading for population sizes).
Showing gene variants in regions defined by NCBI RefSeq exons, putative promoter, and PMT resequencing assays.
Note: Frequencies are calculated directly from reported genotypes and may vary from consensus frequencies reported by the 1000 Genomes project, which relied on additional data and the GATK tool Variant Quality Score Recalibrator.
dbSNP build 142.
Array availability: I - found on Illumina Human1M-Duo BeadChip (2011-04-21)  A - found on Affymetrix Genome-Wide SNP Array 6.0 (2011-06-21)  
Download the SNP table data as a tab-delimited file.

Transmembrane prediction: TOPO2 image is not available.