UCSF Pharmacogenetics of Membrane Transporters
Gene View
Common Name:NCKX5
HGNC Symbol:SLC24A5
HGNC Description:solute carrier family 24 (sodium/potassium/calcium exchanger), member 5
HGNC ID:20611
Superfamily:SLC
Chromosome:Chr.15(+): 48413169-48434926 GRCh37
Location:15q21.1
OMIM:609802
OMIM Phenotype:None
Accessions:AF348468
Nucleotide RefSeq:NM_205850
Protein RefSeq:NP_995322
Entrez:283652
Ensembl:ENSG00000188467
Isoforms:3
Evidence:None
Tissues:No data
Type:protein-coding
Sets:0
PharmGKB ID:PA134868972
HPRD ID:18055
Substrates:No data
Trivial Names:JSX, OCA6, NCKX5, SHEP4
Transcripts:NM_205850.2 [Chr.15(+): 48413169-48434589 GRCh37]
XM_005254308.1 [Chr.15(+): 48413169-48434926 GRCh37]
XM_005254309.1 [Chr.15(+): 48413227-48434926 GRCh37]
ENST00000341459 [Chr.15(+): 48413169-48434869 GRCh37]
ENST00000449382 [Chr.15(+): 48413221-48434592 GRCh37]
ENST00000463289 [Chr.15(+): 48414173-48429399 GRCh37]
ENST00000482911 [Chr.15(+): 48413201-48416875 GRCh37]
Annotation History:View Events (21)

GTEx Expression by Gene and Transcript

The heat map summarizes relative expression by tissue type at two levels of tissue detail, e.g., 'Brain' and 'Brain - Amygdala'. Choose among four calculated expression values, including mean and median RPKM values, and quantile normalized (QN) distributions of these values. (Note that differences between some distributions are subtle.) The coloring is relative to the mean of all displayed values. All values are log base 2. (See also PMT GTEx Expression Plotting.) Click on a transcript or tissue to resort the data.

Tissues:
Expression values:
No expression data exists for SLC24A5.

Variant Data

View all PMT variants for SLC24A5 on UCSC Genome Browser
Showing SNP features for transcript:   
1000 Genomes  

20141104 phase 3 variant call set of the 20130502 sequence freeze and alignments for SNPs and short indels (indels > 255 and structural variants are not included here). This variant set contains 2504 individuals from 26 populations (mouse over population column heading for population sizes).
Showing gene variants in regions defined by NCBI RefSeq exons, putative promoter, and PMT resequencing assays.
Note: Frequencies are calculated directly from reported genotypes and may vary from consensus frequencies reported by the 1000 Genomes project, which relied on additional data and the GATK tool Variant Quality Score Recalibrator.
dbSNP build 142.
Array availability: I - found on Illumina Human1M-Duo BeadChip (2011-04-21)  A - found on Affymetrix Genome-Wide SNP Array 6.0 (2011-06-21)  
Download the SNP table data as a tab-delimited file.

Transmembrane prediction:

Non-synonymous amino acid changes shown in red, indels (insertions and deletions) in blue, and synonymous changes in green. Exon(s) indicated by black outlines.