UCSF Pharmacogenetics of Membrane Transporters
Gene View
Common Name:CTP,SLC20A3
HGNC Symbol:SLC25A1
HGNC Description:solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1
HGNC ID:10979
Superfamily:SLC
Chromosome:Chr.22(-): 19163088-19166338 GRCh37
Location:22q11.21
OMIM:190315
OMIM Phenotype:None
Accessions:L75823
Nucleotide RefSeq:NM_005984
Protein RefSeq:NP_005975
Entrez:6576
Ensembl:ENSG00000100075
Isoforms:2
Evidence:None
Tissues:None
Type:protein-coding
Sets:0
PharmGKB ID:PA35855
HPRD ID:01832
Substrates:None
Trivial Names:CTP, SEA, D2L2AD, SLC20A3
Transcripts:NM_005984.3 [Chr.22(-): 19163088-19166338 GRCh37]
NM_001256534.1 [Chr.22(-): 19163088-19166018 GRCh37]
ENST00000215882 [Chr.22(-): 19163095-19166343 GRCh37]
ENST00000451283 [Chr.22(-): 19163106-19166034 GRCh37]
ENST00000461267 [Chr.22(-): 19164180-19165993 GRCh37]
ENST00000468824 [Chr.22(-): 19165503-19166148 GRCh37]
ENST00000470922 [Chr.22(-): 19163123-19166252 GRCh37]
Annotation History:View Events (17)

GTEx Expression by Gene and Transcript

The heat map summarizes relative expression by tissue type at two levels of tissue detail, e.g., 'Brain' and 'Brain - Amygdala'. Choose among four calculated expression values, including mean and median RPKM values, and quantile normalized (QN) distributions of these values. (Note that differences between some distributions are subtle.) The coloring is relative to the mean of all displayed values. All values are log base 2. (See also PMT GTEx Expression Plotting.) Click on a transcript or tissue to resort the data.

Tissues:
Expression values:
No expression data exists for SLC25A1.

Variant Data

View all PMT variants for SLC25A1 on UCSC Genome Browser
Showing SNP features for transcript:   
1000 Genomes  

20141104 phase 3 variant call set of the 20130502 sequence freeze and alignments for SNPs and short indels (indels > 255 and structural variants are not included here). This variant set contains 2504 individuals from 26 populations (mouse over population column heading for population sizes).
Showing gene variants in regions defined by NCBI RefSeq exons, putative promoter, and PMT resequencing assays.
Note: Frequencies are calculated directly from reported genotypes and may vary from consensus frequencies reported by the 1000 Genomes project, which relied on additional data and the GATK tool Variant Quality Score Recalibrator.
dbSNP build 142.
Array availability: I - found on Illumina Human1M-Duo BeadChip (2011-04-21)  A - found on Affymetrix Genome-Wide SNP Array 6.0 (2011-06-21)  
Download the SNP table data as a tab-delimited file.

Transmembrane prediction: TOPO2 image is not available.