UCSF Pharmacogenetics of Membrane Transporters
Gene View
Common Name:GC1
HGNC Symbol:SLC25A22
HGNC Description:solute carrier family 25 (mitochondrial carrier: glutamate), member 22
HGNC ID:19954
Superfamily:SLC
Chromosome:Chr.11(-): 790475-798269 GRCh37
Location:11p15.5
OMIM:609302
OMIM Phenotype:None
Accessions:BC023545
Nucleotide RefSeq:NM_024698
Protein RefSeq:NP_078974
Entrez:79751
Ensembl:ENSG00000177542
Isoforms:3
Evidence:None
Tissues:None
Type:protein-coding
Sets:0
PharmGKB ID:PA134955826
HPRD ID:15356
Substrates:None
Trivial Names:GC1, EIEE3, NET44
Transcripts:NM_024698.5 [Chr.11(-): 790475-796263 GRCh37]
NM_001191061.1 [Chr.11(-): 790475-798269 GRCh37]
NM_001191060.1 [Chr.11(-): 790475-797995 GRCh37]
ENST00000320230 [Chr.11(-): 790475-796361 GRCh37]
ENST00000456706 [Chr.11(-): 792953-795438 GRCh37]
ENST00000481290 [Chr.11(-): 792342-795175 GRCh37]
ENST00000524891 [Chr.11(-): 793478-795006 GRCh37]
ENST00000525010 [Chr.11(-): 794369-795419 GRCh37]
ENST00000525644 [Chr.11(-): 794406-795419 GRCh37]
ENST00000526152 [Chr.11(-): 792900-795419 GRCh37]
ENST00000527127 [Chr.11(-): 794261-795193 GRCh37]
ENST00000527723 [Chr.11(-): 792924-795336 GRCh37]
ENST00000527734 [Chr.11(-): 792922-795394 GRCh37]
ENST00000528606 [Chr.11(-): 792913-796250 GRCh37]
ENST00000528936 [Chr.11(-): 792943-795458 GRCh37]
ENST00000529066 [Chr.11(-): 793587-795677 GRCh37]
ENST00000529351 [Chr.11(-): 792870-797998 GRCh37]
ENST00000530360 [Chr.11(-): 794481-796240 GRCh37]
ENST00000531214 [Chr.11(-): 791644-797995 GRCh37]
ENST00000531437 [Chr.11(-): 792445-798271 GRCh37]
ENST00000531514 [Chr.11(-): 792940-798316 GRCh37]
ENST00000531534 [Chr.11(-): 793589-795705 GRCh37]
ENST00000532361 [Chr.11(-): 793905-796255 GRCh37]
ENST00000532459 [Chr.11(-): 794403-796200 GRCh37]
ENST00000532484 [Chr.11(-): 792963-797994 GRCh37]
ENST00000533385 [Chr.11(-): 792878-795286 GRCh37]

GTEx Expression by Gene and Transcript

The heat map summarizes relative expression by tissue type at two levels of tissue detail, e.g., 'Brain' and 'Brain - Amygdala'. Choose among four calculated expression values, including mean and median RPKM values, and quantile normalized (QN) distributions of these values. (Note that differences between some distributions are subtle.) The coloring is relative to the mean of all displayed values. All values are log base 2. (See also PMT GTEx Expression Plotting.) Click on a transcript or tissue to resort the data.

Tissues:
Expression values:
No expression data exists for SLC25A22.

Variant Data

View all PMT variants for SLC25A22 on UCSC Genome Browser
Showing SNP features for transcript:   
1000 Genomes  

20141104 phase 3 variant call set of the 20130502 sequence freeze and alignments for SNPs and short indels (indels > 255 and structural variants are not included here). This variant set contains 2504 individuals from 26 populations (mouse over population column heading for population sizes).
Showing gene variants in regions defined by NCBI RefSeq exons, putative promoter, and PMT resequencing assays.
Note: Frequencies are calculated directly from reported genotypes and may vary from consensus frequencies reported by the 1000 Genomes project, which relied on additional data and the GATK tool Variant Quality Score Recalibrator.
dbSNP build 142.
Array availability: I - found on Illumina Human1M-Duo BeadChip (2011-04-21)  A - found on Affymetrix Genome-Wide SNP Array 6.0 (2011-06-21)  
Download the SNP table data as a tab-delimited file.

Transmembrane prediction: TOPO2 image is not available.