UCSF Pharmacogenetics of Membrane Transporters
Gene View
Common Name:None
HGNC Symbol:SLC25A39
HGNC Description:solute carrier family 25, member 39
HGNC ID:24279
Superfamily:SLC
Chromosome:Chr.17(-): 42396993-42402217 GRCh37
Location:17q12
OMIM:610820
OMIM Phenotype:None
Accessions:None
Nucleotide RefSeq:NM_016016
Protein RefSeq:NP_057100
Entrez:51629
Ensembl:ENSG00000013306
Isoforms:5
Evidence:None
Tissues:None
Type:protein-coding
Sets:None
PharmGKB ID:
HPRD ID:13040
Substrates:None
Trivial Names:CGI69, CGI-69
Transcripts:NM_001143780.1 [Chr.17(-): 42396993-42402217 GRCh37]
NM_016016.2 [Chr.17(-): 42396993-42402217 GRCh37]
XM_005257443.1 [Chr.17(-): 42396994-42402215 GRCh37]
XM_005257444.1 [Chr.17(-): 42396994-42402215 GRCh37]
XM_005257445.1 [Chr.17(-): 42396994-42402212 GRCh37]
ENST00000225308 [Chr.17(-): 42396993-42402238 GRCh37]
ENST00000377095 [Chr.17(-): 42397004-42402183 GRCh37]
ENST00000537904 [Chr.17(-): 42397238-42402195 GRCh37]
ENST00000585523 [Chr.17(-): 42399895-42402198 GRCh37]
ENST00000585636 [Chr.17(-): 42398845-42402195 GRCh37]
ENST00000585695 [Chr.17(-): 42398306-42402195 GRCh37]
ENST00000586016 [Chr.17(-): 42397041-42402150 GRCh37]
ENST00000586633 [Chr.17(-): 42399790-42402190 GRCh37]
ENST00000588049 [Chr.17(-): 42398802-42402186 GRCh37]
ENST00000588315 [Chr.17(-): 42397997-42402195 GRCh37]
ENST00000588767 [Chr.17(-): 42397363-42399813 GRCh37]
ENST00000590194 [Chr.17(-): 42397010-42402177 GRCh37]
ENST00000591006 [Chr.17(-): 42396995-42401515 GRCh37]
ENST00000591151 [Chr.17(-): 42399841-42402174 GRCh37]
ENST00000592372 [Chr.17(-): 42397059-42398515 GRCh37]
ENST00000592857 [Chr.17(-): 42399807-42402138 GRCh37]
ENST00000593166 [Chr.17(-): 42397188-42398892 GRCh37]

GTEx Expression by Gene and Transcript

The heat map summarizes relative expression by tissue type at two levels of tissue detail, e.g., 'Brain' and 'Brain - Amygdala'. Choose among four calculated expression values, including mean and median RPKM values, and quantile normalized (QN) distributions of these values. (Note that differences between some distributions are subtle.) The coloring is relative to the mean of all displayed values. All values are log base 2. (See also PMT GTEx Expression Plotting.) Click on a transcript or tissue to resort the data.

Tissues:
Expression values:
No expression data exists for SLC25A39.

Variant Data

View all PMT variants for SLC25A39 on UCSC Genome Browser
Showing SNP features for transcript:   
1000 Genomes  

20141104 phase 3 variant call set of the 20130502 sequence freeze and alignments for SNPs and short indels (indels > 255 and structural variants are not included here). This variant set contains 2504 individuals from 26 populations (mouse over population column heading for population sizes).
Showing gene variants in regions defined by NCBI RefSeq exons, putative promoter, and PMT resequencing assays.
Note: Frequencies are calculated directly from reported genotypes and may vary from consensus frequencies reported by the 1000 Genomes project, which relied on additional data and the GATK tool Variant Quality Score Recalibrator.
dbSNP build 142.
Array availability: I - found on Illumina Human1M-Duo BeadChip (2011-04-21)  A - found on Affymetrix Genome-Wide SNP Array 6.0 (2011-06-21)  
Download the SNP table data as a tab-delimited file.

Transmembrane prediction: TOPO2 image is not available.