UCSF Pharmacogenetics of Membrane Transporters
Gene View
Common Name:FATP3
HGNC Symbol:SLC27A3
HGNC Description:solute carrier family 27 (fatty acid transporter), member 3
HGNC ID:10997
Superfamily:SLC
Chromosome:Chr.1(+): 153746830-153752633 GRCh37
Location:1q21.3
OMIM:604193
OMIM Phenotype:None
Accessions:NM_024330
Nucleotide RefSeq:NM_024330
Protein RefSeq:NP_077306
Entrez:11000
Ensembl:ENSG00000143554
Isoforms:5
Evidence:Tissue Distribution Evidence: 1. Murine FATP3 is expressed in lung, liver, and testis (Northern blot). Hirsch, D; Stahl, A; Lodish, HF. PNAS 1998 Jul 21, 95(15):8625-9 PMID 9671728.
Tissues:(mouse: lung, liver, testes)
Type:protein-coding
Sets:V
PharmGKB ID:PA35871
HPRD ID:11967
Substrates:fatty acids
Trivial Names:FATP3, ACSVL3, VLCS-3
Transcripts:NM_024330.1 [Chr.1(+): 153747768-153752633 GRCh37]
XM_005244851.1 [Chr.1(+): 153746830-153752633 GRCh37]
XM_005244852.1 [Chr.1(+): 153746830-153752633 GRCh37]
XM_005276733.1 [Chr.1(+): 91055-96858 GRCh37]
XM_005276734.1 [Chr.1(+): 91055-96858 GRCh37]
ENST00000271857 [Chr.1(+): 153746830-153752633 GRCh37]
ENST00000368659 [Chr.1(+): 153751677-153752600 GRCh37]
ENST00000368660 [Chr.1(+): 153751527-153752627 GRCh37]
ENST00000368661 [Chr.1(+): 153747768-153752630 GRCh37]
ENST00000458027 [Chr.1(+): 153749072-153752633 GRCh37]
ENST00000461269 [Chr.1(+): 153749076-153750561 GRCh37]
ENST00000468044 [Chr.1(+): 153751116-153752110 GRCh37]
ENST00000468403 [Chr.1(+): 153747795-153752632 GRCh37]
ENST00000483574 [Chr.1(+): 153748226-153752600 GRCh37]
ENST00000484014 [Chr.1(+): 153747789-153752632 GRCh37]
ENST00000524676 [Chr.1(+): 153750988-153752359 GRCh37]
ENST00000531251 [Chr.1(+): 153750463-153751272 GRCh37]
ENST00000532853 [Chr.1(+): 153750673-153751863 GRCh37]
Annotation History:View Events (35)

GTEx Expression by Gene and Transcript

The heat map summarizes relative expression by tissue type at two levels of tissue detail, e.g., 'Brain' and 'Brain - Amygdala'. Choose among four calculated expression values, including mean and median RPKM values, and quantile normalized (QN) distributions of these values. (Note that differences between some distributions are subtle.) The coloring is relative to the mean of all displayed values. All values are log base 2. (See also PMT GTEx Expression Plotting.) Click on a transcript or tissue to resort the data.

Tissues:
Expression values:
No expression data exists for SLC27A3.

Variant Data

View all PMT variants for SLC27A3 on UCSC Genome Browser
Showing SNP features for transcript:   
1000 Genomes  

20141104 phase 3 variant call set of the 20130502 sequence freeze and alignments for SNPs and short indels (indels > 255 and structural variants are not included here). This variant set contains 2504 individuals from 26 populations (mouse over population column heading for population sizes).
Showing gene variants in regions defined by NCBI RefSeq exons, putative promoter, and PMT resequencing assays.
Note: Frequencies are calculated directly from reported genotypes and may vary from consensus frequencies reported by the 1000 Genomes project, which relied on additional data and the GATK tool Variant Quality Score Recalibrator.
dbSNP build 142.
Array availability: I - found on Illumina Human1M-Duo BeadChip (2011-04-21)  A - found on Affymetrix Genome-Wide SNP Array 6.0 (2011-06-21)  
Download the SNP table data as a tab-delimited file.

Transmembrane prediction: TOPO2 image is not available.