UCSF Pharmacogenetics of Membrane Transporters
Gene View
Common Name:None
HGNC Description:SLC2A4 regulator
HGNC ID:15930
Chromosome:Chr.20(+): 62371211-62375403 GRCh37
OMIM Phenotype:None
Nucleotide RefSeq:NM_020062
Protein RefSeq:NP_064446
Tissues:heart, skeletal muscle, liver, kidney, and pancreas
PharmGKB ID:PA38052
HPRD ID:15364
Trivial Names:GEF, HDBP1, HDBP-1, Si-1-2, Si-1-2-19
Transcripts:NM_020062.3 [Chr.20(+): 62371211-62375403 GRCh37]
ENST00000266077 [Chr.20(+): 62371214-62374858 GRCh37]
ENST00000473157 [Chr.20(+): 62373268-62374858 GRCh37]
ENST00000474248 [Chr.20(+): 62371596-62373519 GRCh37]
ENST00000482718 [Chr.20(+): 62373275-62373888 GRCh37]
ENST00000485897 [Chr.20(+): 62371733-62373843 GRCh37]
ENST00000491109 [Chr.20(+): 62372757-62373887 GRCh37]
ENST00000493772 [Chr.20(+): 62372605-62374858 GRCh37]
ENST00000496425 [Chr.20(+): 62373881-62374470 GRCh37]
Annotation History:View Events (1)

GTEx Expression by Gene and Transcript

The heat map summarizes relative expression by tissue type at two levels of tissue detail, e.g., 'Brain' and 'Brain - Amygdala'. Choose among four calculated expression values, including mean and median RPKM values, and quantile normalized (QN) distributions of these values. (Note that differences between some distributions are subtle.) The coloring is relative to the mean of all displayed values. All values are log base 2. (See also PMT GTEx Expression Plotting.) Click on a transcript or tissue to resort the data.

Expression values:
No expression data exists for SLC2A4RG.

Variant Data

View all PMT variants for SLC2A4RG on UCSC Genome Browser
Showing SNP features for transcript: NM_020062  
1000 Genomes  

20141104 phase 3 variant call set of the 20130502 sequence freeze and alignments for SNPs and short indels (indels > 255 and structural variants are not included here). This variant set contains 2504 individuals from 26 populations (mouse over population column heading for population sizes).
Showing gene variants in regions defined by NCBI RefSeq exons, putative promoter, and PMT resequencing assays.
Note: Frequencies are calculated directly from reported genotypes and may vary from consensus frequencies reported by the 1000 Genomes project, which relied on additional data and the GATK tool Variant Quality Score Recalibrator.
dbSNP build 142.
Array availability: I - found on Illumina Human1M-Duo BeadChip (2011-04-21)  A - found on Affymetrix Genome-Wide SNP Array 6.0 (2011-06-21)  
Download the SNP table data as a tab-delimited file.

Transmembrane prediction: TOPO2 image is not available.