UCSF Pharmacogenetics of Membrane Transporters
Gene View
Common Name:ZNT-8
HGNC Symbol:SLC30A8
HGNC Description:solute carrier family 30 (zinc transporter), member 8
HGNC ID:20303
Chromosome:Chr.8(+): 117962512-118188953 GRCh37
OMIM Phenotype:None
Nucleotide RefSeq:NM_173851
Protein RefSeq:NP_776250
Evidence:Tissue Distribution Evidence: Brain, Liver - Palmiter RD, et al. Pflugers Archives. 2003 (Epub).
Tissues:Brain, Liver
PharmGKB ID:PA134915546
HPRD ID:15370
Substrates:No data
Trivial Names:ZNT8, ZnT-8
Transcripts:NM_173851.2 [Chr.8(+): 118147337-118188953 GRCh37]
NM_001172811.1 [Chr.8(+): 117962512-118188953 GRCh37]
NM_001172813.1 [Chr.8(+): 117963190-118188953 GRCh37]
NM_001172815.1 [Chr.8(+): 117963190-118188953 GRCh37]
NM_001172814.1 [Chr.8(+): 118147337-118188953 GRCh37]
XM_005250809.1 [Chr.8(+): 117963258-118188952 GRCh37]
ENST00000427715 [Chr.8(+): 117963190-118188953 GRCh37]
ENST00000456015 [Chr.8(+): 118147567-118186330 GRCh37]
ENST00000518396 [Chr.8(+): 118147266-118159377 GRCh37]
ENST00000518521 [Chr.8(+): 118147047-118165214 GRCh37]
ENST00000519688 [Chr.8(+): 118147498-118184974 GRCh37]
ENST00000520469 [Chr.8(+): 118147313-118159848 GRCh37]
ENST00000521035 [Chr.8(+): 117963188-118159250 GRCh37]
ENST00000521243 [Chr.8(+): 117962512-118185030 GRCh37]
ENST00000524274 [Chr.8(+): 117962729-118165321 GRCh37]

GTEx Expression by Gene and Transcript

The heat map summarizes relative expression by tissue type at two levels of tissue detail, e.g., 'Brain' and 'Brain - Amygdala'. Choose among four calculated expression values, including mean and median RPKM values, and quantile normalized (QN) distributions of these values. (Note that differences between some distributions are subtle.) The coloring is relative to the mean of all displayed values. All values are log base 2. (See also PMT GTEx Expression Plotting.) Click on a transcript or tissue to resort the data.

Expression values:
No expression data exists for SLC30A8.

Variant Data

View all PMT variants for SLC30A8 on UCSC Genome Browser
Showing SNP features for transcript:   
1000 Genomes  

20141104 phase 3 variant call set of the 20130502 sequence freeze and alignments for SNPs and short indels (indels > 255 and structural variants are not included here). This variant set contains 2504 individuals from 26 populations (mouse over population column heading for population sizes).
Showing gene variants in regions defined by NCBI RefSeq exons, putative promoter, and PMT resequencing assays.
Note: Frequencies are calculated directly from reported genotypes and may vary from consensus frequencies reported by the 1000 Genomes project, which relied on additional data and the GATK tool Variant Quality Score Recalibrator.
dbSNP build 142.
Array availability: I - found on Illumina Human1M-Duo BeadChip (2011-04-21)  A - found on Affymetrix Genome-Wide SNP Array 6.0 (2011-06-21)  
Download the SNP table data as a tab-delimited file.

Transmembrane prediction:

Non-synonymous amino acid changes shown in red, indels (insertions and deletions) in blue, and synonymous changes in green. Exon(s) indicated by black outlines.