UCSF Pharmacogenetics of Membrane Transporters
Gene View
Common Name:FLJ20730
HGNC Symbol:SLC35A5
HGNC Description:solute carrier family 35, member A5
HGNC ID:20792
Superfamily:SLC
Chromosome:Chr.3(+): 112280857-112303286 GRCh37
Location:3q13.2
OMIM:
OMIM Phenotype:None
Accessions:BC010307
Nucleotide RefSeq:NM_017945
Protein RefSeq:NP_060415
Entrez:55032
Ensembl:ENSG00000138459
Isoforms:1
Evidence:None
Tissues:None
Type:protein-coding
Sets:0
PharmGKB ID:PA134947136
HPRD ID:11575
Substrates:Unknown
Trivial Names:
Transcripts:NM_017945.3 [Chr.3(+): 112280857-112303286 GRCh37]
ENST00000261034 [Chr.3(+): 112280919-112303003 GRCh37]
ENST00000460615 [Chr.3(+): 112289286-112299603 GRCh37]
ENST00000460713 [Chr.3(+): 112282308-112301999 GRCh37]
ENST00000468642 [Chr.3(+): 112280884-112289421 GRCh37]
ENST00000484995 [Chr.3(+): 112280556-112299406 GRCh37]
ENST00000492406 [Chr.3(+): 112280857-112304424 GRCh37]
ENST00000494706 [Chr.3(+): 112282975-112301577 GRCh37]
Annotation History:View Events (8)

GTEx Expression by Gene and Transcript

The heat map summarizes relative expression by tissue type at two levels of tissue detail, e.g., 'Brain' and 'Brain - Amygdala'. Choose among four calculated expression values, including mean and median RPKM values, and quantile normalized (QN) distributions of these values. (Note that differences between some distributions are subtle.) The coloring is relative to the mean of all displayed values. All values are log base 2. (See also PMT GTEx Expression Plotting.) Click on a transcript or tissue to resort the data.

Tissues:
Expression values:
No expression data exists for SLC35A5.

Variant Data

View all PMT variants for SLC35A5 on UCSC Genome Browser
Showing SNP features for transcript: NM_017945  
1000 Genomes  

20141104 phase 3 variant call set of the 20130502 sequence freeze and alignments for SNPs and short indels (indels > 255 and structural variants are not included here). This variant set contains 2504 individuals from 26 populations (mouse over population column heading for population sizes).
Showing gene variants in regions defined by NCBI RefSeq exons, putative promoter, and PMT resequencing assays.
Note: Frequencies are calculated directly from reported genotypes and may vary from consensus frequencies reported by the 1000 Genomes project, which relied on additional data and the GATK tool Variant Quality Score Recalibrator.
dbSNP build 142.
Array availability: I - found on Illumina Human1M-Duo BeadChip (2011-04-21)  A - found on Affymetrix Genome-Wide SNP Array 6.0 (2011-06-21)  
Download the SNP table data as a tab-delimited file.

Transmembrane prediction: TOPO2 image is not available.