UCSF Pharmacogenetics of Membrane Transporters
Gene View
Common Name:None
HGNC Symbol:SLC35C1
HGNC Description:solute carrier family 35 (GDP-fucose transporter), member C1
HGNC ID:20197
Superfamily:SLC
Chromosome:Chr.11(+): 45825623-45834568 GRCh37
Location:11p11.2
OMIM:605881
OMIM Phenotype:None
Accessions:None
Nucleotide RefSeq:NM_018389
Protein RefSeq:NP_060859
Entrez:55343
Ensembl:ENSG00000181830
Isoforms:5
Evidence:None
Tissues:None
Type:protein-coding
Sets:None
PharmGKB ID:
HPRD ID:09324
Substrates:None
Trivial Names:CDG2C, FUCT1
Transcripts:NM_001145265.1 [Chr.11(+): 45825623-45834567 GRCh37]
NM_001145266.1 [Chr.11(+): 45825623-45834567 GRCh37]
NM_018389.4 [Chr.11(+): 45826641-45834567 GRCh37]
XM_005253002.1 [Chr.11(+): 45826627-45834568 GRCh37]
XM_005253003.1 [Chr.11(+): 45826903-45829773 GRCh37]
ENST00000314134 [Chr.11(+): 45825957-45834566 GRCh37]
ENST00000442528 [Chr.11(+): 45825623-45833109 GRCh37]
ENST00000456334 [Chr.11(+): 45825623-45834561 GRCh37]
ENST00000526817 [Chr.11(+): 45825637-45827607 GRCh37]
ENST00000530471 [Chr.11(+): 45826700-45827887 GRCh37]
Annotation History:View Events (20)

GTEx Expression by Gene and Transcript

The heat map summarizes relative expression by tissue type at two levels of tissue detail, e.g., 'Brain' and 'Brain - Amygdala'. Choose among four calculated expression values, including mean and median RPKM values, and quantile normalized (QN) distributions of these values. (Note that differences between some distributions are subtle.) The coloring is relative to the mean of all displayed values. All values are log base 2. (See also PMT GTEx Expression Plotting.) Click on a transcript or tissue to resort the data.

Tissues:
Expression values:
No expression data exists for SLC35C1.

Variant Data

View all PMT variants for SLC35C1 on UCSC Genome Browser
Showing SNP features for transcript:   
1000 Genomes  

20141104 phase 3 variant call set of the 20130502 sequence freeze and alignments for SNPs and short indels (indels > 255 and structural variants are not included here). This variant set contains 2504 individuals from 26 populations (mouse over population column heading for population sizes).
Showing gene variants in regions defined by NCBI RefSeq exons, putative promoter, and PMT resequencing assays.
Note: Frequencies are calculated directly from reported genotypes and may vary from consensus frequencies reported by the 1000 Genomes project, which relied on additional data and the GATK tool Variant Quality Score Recalibrator.
dbSNP build 142.
Array availability: I - found on Illumina Human1M-Duo BeadChip (2011-04-21)  A - found on Affymetrix Genome-Wide SNP Array 6.0 (2011-06-21)  
Download the SNP table data as a tab-delimited file.

Transmembrane prediction: TOPO2 image is not available.