UCSF Pharmacogenetics of Membrane Transporters
Gene View
Common Name:None
HGNC Symbol:SLC35C2
HGNC Description:solute carrier family 35 (GDP-fucose transporter), member C2
HGNC ID:17117
Superfamily:SLC
Chromosome:Chr.20(-): 44978167-44993097 GRCh37
Location:20q13.12
OMIM:
OMIM Phenotype:None
Accessions:None
Nucleotide RefSeq:NM_015945
Protein RefSeq:NP_057029
Entrez:51006
Ensembl:ENSG00000080189
Isoforms:8
Evidence:None
Tissues:None
Type:protein-coding
Sets:None
PharmGKB ID:
HPRD ID:15371
Substrates:None
Trivial Names:CGI-15, OVCOV1, C20orf5, BA394O2.1
Transcripts:NM_015945.11 [Chr.20(-): 44978167-44993097 GRCh37]
NM_173073.3 [Chr.20(-): 44978167-44993097 GRCh37]
NM_173179.3 [Chr.20(-): 44978167-44993097 GRCh37]
NM_001281458.1 [Chr.20(-): 44978167-44993097 GRCh37]
NM_001281459.1 [Chr.20(-): 44978167-44993097 GRCh37]
NM_001281457.1 [Chr.20(-): 44978167-44993097 GRCh37]
NM_001281460.1 [Chr.20(-): 44978167-44993097 GRCh37]
XM_005260414.1 [Chr.20(-): 44978368-44993096 GRCh37]
ENST00000243896 [Chr.20(-): 44978167-44993040 GRCh37]
ENST00000317734 [Chr.20(-): 44978167-44993043 GRCh37]
ENST00000372227 [Chr.20(-): 44978167-44991813 GRCh37]
ENST00000372229 [Chr.20(-): 44978167-44993026 GRCh37]
ENST00000372230 [Chr.20(-): 44978167-44993034 GRCh37]
ENST00000420518 [Chr.20(-): 44980803-44987145 GRCh37]
ENST00000424568 [Chr.20(-): 44983743-44987403 GRCh37]
ENST00000480329 [Chr.20(-): 44978994-44983834 GRCh37]
ENST00000481809 [Chr.20(-): 44980789-44993020 GRCh37]
ENST00000484188 [Chr.20(-): 44987066-44993000 GRCh37]
ENST00000484318 [Chr.20(-): 44980762-44993029 GRCh37]
ENST00000487729 [Chr.20(-): 44979410-44986340 GRCh37]
ENST00000493599 [Chr.20(-): 44978167-44981836 GRCh37]
ENST00000543605 [Chr.20(-): 44978832-44993039 GRCh37]
Annotation History:View Events (70)

GTEx Expression by Gene and Transcript

The heat map summarizes relative expression by tissue type at two levels of tissue detail, e.g., 'Brain' and 'Brain - Amygdala'. Choose among four calculated expression values, including mean and median RPKM values, and quantile normalized (QN) distributions of these values. (Note that differences between some distributions are subtle.) The coloring is relative to the mean of all displayed values. All values are log base 2. (See also PMT GTEx Expression Plotting.) Click on a transcript or tissue to resort the data.

Tissues:
Expression values:
No expression data exists for SLC35C2.

Variant Data

View all PMT variants for SLC35C2 on UCSC Genome Browser
Showing SNP features for transcript:   
1000 Genomes  

20141104 phase 3 variant call set of the 20130502 sequence freeze and alignments for SNPs and short indels (indels > 255 and structural variants are not included here). This variant set contains 2504 individuals from 26 populations (mouse over population column heading for population sizes).
Showing gene variants in regions defined by NCBI RefSeq exons, putative promoter, and PMT resequencing assays.
Note: Frequencies are calculated directly from reported genotypes and may vary from consensus frequencies reported by the 1000 Genomes project, which relied on additional data and the GATK tool Variant Quality Score Recalibrator.
dbSNP build 142.
Array availability: I - found on Illumina Human1M-Duo BeadChip (2011-04-21)  A - found on Affymetrix Genome-Wide SNP Array 6.0 (2011-06-21)  
Download the SNP table data as a tab-delimited file.

Transmembrane prediction: TOPO2 image is not available.