UCSF Pharmacogenetics of Membrane Transporters
Gene View
Common Name:None
HGNC Symbol:SLC38A9
HGNC Description:solute carrier family 38, member 9
HGNC ID:26907
Superfamily:SLC
Chromosome:Chr.5(-): 54921673-55008163 GRCh37
Location:5q11.2
OMIM:
OMIM Phenotype:None
Accessions:None
Nucleotide RefSeq:NM_173514
Protein RefSeq:NP_775785
Entrez:153129
Ensembl:ENSG00000177058
Isoforms:3
Evidence:None
Tissues:None
Type:protein-coding
Sets:None
PharmGKB ID:
HPRD ID:08817
Substrates:None
Trivial Names:
Transcripts:NM_173514.3 [Chr.5(-): 54921673-55008163 GRCh37]
NM_001258286.1 [Chr.5(-): 54921673-54988881 GRCh37]
NM_001258287.1 [Chr.5(-): 54921673-54988881 GRCh37]
ENST00000318672 [Chr.5(-): 54921676-54993822 GRCh37]
ENST00000396865 [Chr.5(-): 54921673-55008554 GRCh37]
ENST00000416547 [Chr.5(-): 54921686-54993822 GRCh37]
ENST00000502247 [Chr.5(-): 54965657-54988559 GRCh37]
ENST00000502416 [Chr.5(-): 54993787-55008157 GRCh37]
ENST00000503817 [Chr.5(-): 54965087-54988448 GRCh37]
ENST00000503891 [Chr.5(-): 54965424-55008158 GRCh37]
ENST00000504880 [Chr.5(-): 54991820-55069022 GRCh37]
ENST00000505563 [Chr.5(-): 54988699-55008118 GRCh37]
ENST00000505708 [Chr.5(-): 54921673-54988554 GRCh37]
ENST00000506624 [Chr.5(-): 54993674-55008119 GRCh37]
ENST00000507109 [Chr.5(-): 54993674-55008161 GRCh37]
ENST00000507216 [Chr.5(-): 55000103-55008126 GRCh37]
ENST00000507447 [Chr.5(-): 54960388-54965493 GRCh37]
ENST00000508124 [Chr.5(-): 54921686-55008143 GRCh37]
ENST00000511233 [Chr.5(-): 54922388-54993820 GRCh37]
ENST00000512208 [Chr.5(-): 54952549-55008089 GRCh37]
ENST00000512595 [Chr.5(-): 54922239-54988521 GRCh37]
ENST00000513275 [Chr.5(-): 54993707-55008121 GRCh37]
ENST00000513993 [Chr.5(-): 54965664-55008130 GRCh37]
ENST00000514806 [Chr.5(-): 54964949-55008089 GRCh37]
ENST00000515159 [Chr.5(-): 54921673-54960691 GRCh37]
ENST00000515629 [Chr.5(-): 54921686-54988881 GRCh37]
ENST00000515754 [Chr.5(-): 54929224-54941696 GRCh37]
ENST00000524030 [Chr.5(-): 54945038-54953866 GRCh37]
ENST00000524154 [Chr.5(-): 54952573-54960960 GRCh37]
ENST00000539768 [Chr.5(-): 54921676-54993786 GRCh37]
Annotation History:View Events (21)

GTEx Expression by Gene and Transcript

The heat map summarizes relative expression by tissue type at two levels of tissue detail, e.g., 'Brain' and 'Brain - Amygdala'. Choose among four calculated expression values, including mean and median RPKM values, and quantile normalized (QN) distributions of these values. (Note that differences between some distributions are subtle.) The coloring is relative to the mean of all displayed values. All values are log base 2. (See also PMT GTEx Expression Plotting.) Click on a transcript or tissue to resort the data.

Tissues:
Expression values:
No expression data exists for SLC38A9.

Variant Data

View all PMT variants for SLC38A9 on UCSC Genome Browser
Showing SNP features for transcript:   
1000 Genomes  

20141104 phase 3 variant call set of the 20130502 sequence freeze and alignments for SNPs and short indels (indels > 255 and structural variants are not included here). This variant set contains 2504 individuals from 26 populations (mouse over population column heading for population sizes).
Showing gene variants in regions defined by NCBI RefSeq exons, putative promoter, and PMT resequencing assays.
Note: Frequencies are calculated directly from reported genotypes and may vary from consensus frequencies reported by the 1000 Genomes project, which relied on additional data and the GATK tool Variant Quality Score Recalibrator.
dbSNP build 142.
Array availability: I - found on Illumina Human1M-Duo BeadChip (2011-04-21)  A - found on Affymetrix Genome-Wide SNP Array 6.0 (2011-06-21)  
Download the SNP table data as a tab-delimited file.

Transmembrane prediction: TOPO2 image is not available.