UCSF Pharmacogenetics of Membrane Transporters
Gene View
Common Name:ZIP4
HGNC Symbol:SLC39A4
HGNC Description:solute carrier family 39 (zinc transporter), member 4
HGNC ID:17129
Chromosome:Chr.8(-): 145637798-145642279 GRCh37
OMIM Phenotype:Acrodermatitis ehteropathica
Nucleotide RefSeq:NM_017767
Protein RefSeq:NP_060237
Tissues:Small intestine, stomach, colon, cecum, kidney
PharmGKB ID:PA38204
HPRD ID:06137
Trivial Names:AEZ, ZIP4, AWMS2
Transcripts:NM_017767.2 [Chr.8(-): 145637798-145641917 GRCh37]
NM_130849.3 [Chr.8(-): 145637798-145642279 GRCh37]
NM_001280557.1 [Chr.8(-): 145637798-145638975 GRCh37]
ENST00000276833 [Chr.8(-): 145637798-145641896 GRCh37]
ENST00000301305 [Chr.8(-): 145637798-145642279 GRCh37]
ENST00000526658 [Chr.8(-): 145640250-145642203 GRCh37]
ENST00000527148 [Chr.8(-): 145635126-145638955 GRCh37]
ENST00000529462 [Chr.8(-): 145635779-145638969 GRCh37]
ENST00000530807 [Chr.8(-): 145637798-145638953 GRCh37]
ENST00000531013 [Chr.8(-): 145637799-145638975 GRCh37]
ENST00000531789 [Chr.8(-): 145638724-145639465 GRCh37]
ENST00000532718 [Chr.8(-): 145637798-145638970 GRCh37]
Annotation History:View Events (15)

GTEx Expression by Gene and Transcript

The heat map summarizes relative expression by tissue type at two levels of tissue detail, e.g., 'Brain' and 'Brain - Amygdala'. Choose among four calculated expression values, including mean and median RPKM values, and quantile normalized (QN) distributions of these values. (Note that differences between some distributions are subtle.) The coloring is relative to the mean of all displayed values. All values are log base 2. (See also PMT GTEx Expression Plotting.) Click on a transcript or tissue to resort the data.

Expression values:
No expression data exists for SLC39A4.

Variant Data

View all PMT variants for SLC39A4 on UCSC Genome Browser
Showing SNP features for transcript:   
1000 Genomes  

20141104 phase 3 variant call set of the 20130502 sequence freeze and alignments for SNPs and short indels (indels > 255 and structural variants are not included here). This variant set contains 2504 individuals from 26 populations (mouse over population column heading for population sizes).
Showing gene variants in regions defined by NCBI RefSeq exons, putative promoter, and PMT resequencing assays.
Note: Frequencies are calculated directly from reported genotypes and may vary from consensus frequencies reported by the 1000 Genomes project, which relied on additional data and the GATK tool Variant Quality Score Recalibrator.
dbSNP build 142.
Array availability: I - found on Illumina Human1M-Duo BeadChip (2011-04-21)  A - found on Affymetrix Genome-Wide SNP Array 6.0 (2011-06-21)  
Download the SNP table data as a tab-delimited file.

Transmembrane prediction: TOPO2 image is not available.