UCSF Pharmacogenetics of Membrane Transporters
Gene View
Common Name:ZIP5
HGNC Symbol:SLC39A5
HGNC Description:solute carrier family 39 (zinc transporter), member 5
HGNC ID:20502
Superfamily:SLC
Chromosome:Chr.12(+): 56623820-56631630 GRCh37
Location:12q13.3
OMIM:608730
OMIM Phenotype:None
Accessions:BC027884
Nucleotide RefSeq:NM_173596
Protein RefSeq:NP_775867
Entrez:283375
Ensembl:ENSG00000139540
Isoforms:3
Evidence:None
Tissues:None
Type:protein-coding
Sets:0
PharmGKB ID:PA134872687
HPRD ID:
Substrates:None
Trivial Names:ZIP5, LZT-Hs7
Transcripts:NM_173596.2 [Chr.12(+): 56623820-56631630 GRCh37]
NM_001135195.1 [Chr.12(+): 56624501-56631630 GRCh37]
XM_005268803.1 [Chr.12(+): 56623833-56631630 GRCh37]
ENST00000266980 [Chr.12(+): 56624436-56631630 GRCh37]
ENST00000417965 [Chr.12(+): 56623851-56626571 GRCh37]
ENST00000419232 [Chr.12(+): 56630444-56631598 GRCh37]
ENST00000419753 [Chr.12(+): 56623833-56626653 GRCh37]
ENST00000424625 [Chr.12(+): 56623833-56626556 GRCh37]
ENST00000436633 [Chr.12(+): 56623867-56629110 GRCh37]
ENST00000437277 [Chr.12(+): 56624546-56626563 GRCh37]
ENST00000447080 [Chr.12(+): 56630488-56631627 GRCh37]
ENST00000454355 [Chr.12(+): 56623847-56631630 GRCh37]
ENST00000481103 [Chr.12(+): 56623847-56629596 GRCh37]
ENST00000493574 [Chr.12(+): 56623840-56624501 GRCh37]
Annotation History:View Events (11)

GTEx Expression by Gene and Transcript

The heat map summarizes relative expression by tissue type at two levels of tissue detail, e.g., 'Brain' and 'Brain - Amygdala'. Choose among four calculated expression values, including mean and median RPKM values, and quantile normalized (QN) distributions of these values. (Note that differences between some distributions are subtle.) The coloring is relative to the mean of all displayed values. All values are log base 2. (See also PMT GTEx Expression Plotting.) Click on a transcript or tissue to resort the data.

Tissues:
Expression values:
No expression data exists for SLC39A5.

Variant Data

View all PMT variants for SLC39A5 on UCSC Genome Browser
Showing SNP features for transcript:   
1000 Genomes  

20141104 phase 3 variant call set of the 20130502 sequence freeze and alignments for SNPs and short indels (indels > 255 and structural variants are not included here). This variant set contains 2504 individuals from 26 populations (mouse over population column heading for population sizes).
Showing gene variants in regions defined by NCBI RefSeq exons, putative promoter, and PMT resequencing assays.
Note: Frequencies are calculated directly from reported genotypes and may vary from consensus frequencies reported by the 1000 Genomes project, which relied on additional data and the GATK tool Variant Quality Score Recalibrator.
dbSNP build 142.
Array availability: I - found on Illumina Human1M-Duo BeadChip (2011-04-21)  A - found on Affymetrix Genome-Wide SNP Array 6.0 (2011-06-21)  
Download the SNP table data as a tab-delimited file.

Transmembrane prediction:

Non-synonymous amino acid changes shown in red, indels (insertions and deletions) in blue, and synonymous changes in green. Exon(s) indicated by black outlines.