UCSF Pharmacogenetics of Membrane Transporters
Gene View
Common Name:LZT-Hs6
HGNC Symbol:SLC39A8
HGNC Description:solute carrier family 39 (zinc transporter), member 8
HGNC ID:20862
Superfamily:SLC
Chromosome:Chr.4(-): 103172198-103266655 GRCh37
Location:4q22-q24
OMIM:608732
OMIM Phenotype:None
Accessions:BC001320,BC012125,BI823248,CR624375
Nucleotide RefSeq:NM_022154
Protein RefSeq:NP_071437
Entrez:64116
Ensembl:ENSG00000138821
Isoforms:5
Evidence:None
Tissues:None
Type:protein-coding
Sets:0
PharmGKB ID:PA134931507
HPRD ID:12286
Substrates:None
Trivial Names:ZIP8, PP3105, BIGM103, LZT-Hs6
Transcripts:NM_022154.5 [Chr.4(-): 103182821-103266348 GRCh37]
NM_001135147.1 [Chr.4(-): 103172198-103266410 GRCh37]
NM_001135146.1 [Chr.4(-): 103182821-103266655 GRCh37]
NM_001135148.1 [Chr.4(-): 103182821-103245469 GRCh37]
XM_005263177.1 [Chr.4(-): 103182823-103266362 GRCh37]
ENST00000356736 [Chr.4(-): 103182823-103266631 GRCh37]
ENST00000394833 [Chr.4(-): 103182823-103266296 GRCh37]
ENST00000424970 [Chr.4(-): 103172198-103266362 GRCh37]
ENST00000502903 [Chr.4(-): 103228714-103352415 GRCh37]
ENST00000510255 [Chr.4(-): 103225564-103274157 GRCh37]
ENST00000512337 [Chr.4(-): 103190873-103225645 GRCh37]
ENST00000512657 [Chr.4(-): 103226182-103266639 GRCh37]
ENST00000514000 [Chr.4(-): 103225605-103266594 GRCh37]

GTEx Expression by Gene and Transcript

The heat map summarizes relative expression by tissue type at two levels of tissue detail, e.g., 'Brain' and 'Brain - Amygdala'. Choose among four calculated expression values, including mean and median RPKM values, and quantile normalized (QN) distributions of these values. (Note that differences between some distributions are subtle.) The coloring is relative to the mean of all displayed values. All values are log base 2. (See also PMT GTEx Expression Plotting.) Click on a transcript or tissue to resort the data.

Tissues:
Expression values:
No expression data exists for SLC39A8.

Variant Data

View all PMT variants for SLC39A8 on UCSC Genome Browser
Showing SNP features for transcript:   
1000 Genomes  

20141104 phase 3 variant call set of the 20130502 sequence freeze and alignments for SNPs and short indels (indels > 255 and structural variants are not included here). This variant set contains 2504 individuals from 26 populations (mouse over population column heading for population sizes).
Showing gene variants in regions defined by NCBI RefSeq exons, putative promoter, and PMT resequencing assays.
Note: Frequencies are calculated directly from reported genotypes and may vary from consensus frequencies reported by the 1000 Genomes project, which relied on additional data and the GATK tool Variant Quality Score Recalibrator.
dbSNP build 142.
Array availability: I - found on Illumina Human1M-Duo BeadChip (2011-04-21)  A - found on Affymetrix Genome-Wide SNP Array 6.0 (2011-06-21)  
Download the SNP table data as a tab-delimited file.

Transmembrane prediction:

Non-synonymous amino acid changes shown in red, indels (insertions and deletions) in blue, and synonymous changes in green. Exon(s) indicated by black outlines.