UCSF Pharmacogenetics of Membrane Transporters
Gene View
Common Name:4F2
HGNC Symbol:SLC3A2
HGNC Description:solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2
HGNC ID:11026
Chromosome:Chr.11(+): 62380094-62412929
Location:11q13
OMIM:158070
OMIM Phenotype:None
Accessions:NM_002394
Nucleotide RefSeq:NM_001012661
Protein RefSeq:NP_001012679
Entrez:6520
Isoforms:6
Evidence:Substrate In Vitro Evidence: SLC3A2 (4F2hc) is the "heavy chain" of several heterodimeric amino acid transporters (HATs), which is necessary for proper insertion of the heterodimer partner ("light chain"), considered the catalytic subunit, into the plasma membrane. The heterodimer partners of SLC3A2 are several members of the SLC7 family (see SLC7A6-10). The substrate specificity of these dimers varies with the identity of the SLC7 family subunit. Substrate In Vivo Evidence: SLC3A2 has not been directly associated with any human disease; however, several SLC7 family members, which require SLC3A2 for activity, have been associated with diseases of amino acid hyperexcretion (see SLC7A6-10). Tissue Distribution Evidence: Northern blot analysis in mice demonstrated that the 4F2hc gene is expressed at relatively high levels in adult testis, lung, brain, kidney, and spleen, and at significantly lower levels in adult liver and cardiac and skeletal muscle (Parmacek MS, Karpinski BA, Gottesdiener KM, Thompson CB, Leiden JM. Structure, expression and regulation of the murine 4F2 heavy chain. Nucleic Acids Res 17(5): 1915-31, 1989).
Tissues:Mice: testis, lung, brain, kidney, spleen (high); liver, cardiac muscle, skeletal muscle (low)
Type:protein coding
Sets:IV
PharmGKB ID:PA35894
HPRD ID:01148
Substrates:See SLC7
Trivial Names:4F2, CD98, MDU1, 4F2HC, 4T2HC, NACAE, CD98HC
Transcripts:NM_001012661 [Chr.11(+): 62380094-62412929]
NM_001012662 [Chr.11(+): 62380094-62412929]
NM_001012663 [Chr.11(+): 62380094-62412929]
NM_001012664 [Chr.11(+): 62380094-62412929]
NM_001013251 [Chr.11(+): 62404863-62412929]
NM_002394 [Chr.11(+): 62380094-62412929]
SLC3A2 RESEQUENCING
[Your browser is not displaying the SVG image of experimental data in gene context.]
Study Name:SLC3A2 RESEQUENCING
Experiments:
SNP impact: P - Public  D - Discovered  E - Exclusive  (dbSNP build 130)
SNP array availability: I - found on Illumina Human1M-Duo BeadChip  A - found on Affymetrix Genome-Wide SNP Array 6.0  
FeaturePMT SNP IDdbSNP/ PubMedSNP Array AvailabilityGenomic PositionTranscript PositionCoding PositionNucleotide ChangeStrand, '+' or '-'Amino Acid PositionAmino Acid ChangeStatisticsAA FreqCA FreqAS FreqME FreqSample Set
Promoter
3178
PDE
 62379870-224-448
AAAAGAAAATAAAAGAAAAAGACAA A → AA GTACAAAAGAGTAACAGCTATAAAG
+ 
 
n=
A/A=
A/AA=
AA/AA=
AA=
132
66
0
0
0.000
124
62
0
0
0.000
128
64
0
0
0.000
126
62
1
0
0.008
PMT-272
Promoter
3002
PDE
 62380073-21-245
TTGTGGGTAGAGAGTTCCAGGGAAG G → C AGGGCGTAGACAAAGCGCCACCTGA
+ 
 
n=
G/G=
G/C=
C/C=
C=
132
65
1
0
0.008
124
62
0
0
0.000
128
64
0
0
0.000
124
62
0
0
0.000
PMT-272
Exon: 5UTR
3003
PDE
 6238015764-161
ACGGGAGCGTGCTGGCTCACCGACC G → A CATTGCGGCTTGGTTTTCTCACCCA
+ 
 
n=
G/G=
G/A=
A/A=
A=
132
66
0
0
0.000
124
61
1
0
0.008
128
64
0
0
0.000
124
62
0
0
0.000
PMT-272

Transmembrane prediction: TOPO2 image is not available.