UCSF Pharmacogenetics of Membrane Transporters
Gene View
Common Name:SLC41A1-L2
HGNC Symbol:SLC41A3
HGNC Description:solute carrier family 41, member 3
HGNC ID:31046
Superfamily:SLC
Chromosome:Chr.3(-): 125725200-125820398 GRCh37
Location:3q21.2
OMIM:610803
OMIM Phenotype:None
Accessions:AI814125,AL560923,AW938624,BC009039,BM547018
Nucleotide RefSeq:NM_001008485
Protein RefSeq:NP_001008485
Entrez:54946
Ensembl:ENSG00000114544
Isoforms:13
Evidence:None
Tissues:None
Type:protein-coding
Sets:0
PharmGKB ID:PA134878151
HPRD ID:11580
Substrates:None
Trivial Names:SLC41A1-L2
Transcripts:NM_001008485.1 [Chr.3(-): 125725200-125803134 GRCh37]
NM_001008486.1 [Chr.3(-): 125725200-125803134 GRCh37]
NM_001008487.1 [Chr.3(-): 125725200-125775618 GRCh37]
NM_017836.3 [Chr.3(-): 125725200-125803134 GRCh37]
NM_001164475.1 [Chr.3(-): 125725200-125820391 GRCh37]
XM_005247563.1 [Chr.3(-): 125725200-125820398 GRCh37]
XM_005247566.1 [Chr.3(-): 125725200-125802967 GRCh37]
XM_005247559.1 [Chr.3(-): 125725200-125802967 GRCh37]
XM_005247564.1 [Chr.3(-): 125725200-125802967 GRCh37]
XM_005247562.1 [Chr.3(-): 125725200-125802864 GRCh37]
XM_005247561.1 [Chr.3(-): 125725200-125802851 GRCh37]
XM_005247560.1 [Chr.3(-): 125725200-125802851 GRCh37]
XM_005247565.1 [Chr.3(-): 125725200-125775993 GRCh37]
ENST00000315891 [Chr.3(-): 125725216-125803147 GRCh37]
ENST00000346785 [Chr.3(-): 125725200-125803147 GRCh37]
ENST00000360370 [Chr.3(-): 125725198-125802952 GRCh37]
ENST00000383598 [Chr.3(-): 125725201-125775681 GRCh37]
ENST00000504035 [Chr.3(-): 125752447-125802939 GRCh37]
ENST00000504118 [Chr.3(-): 125725201-125725729 GRCh37]
ENST00000505996 [Chr.3(-): 125769786-125802967 GRCh37]
ENST00000506102 [Chr.3(-): 125725206-125742607 GRCh37]
ENST00000507008 [Chr.3(-): 125735574-125820404 GRCh37]
ENST00000507280 [Chr.3(-): 125752447-125797877 GRCh37]
ENST00000508835 [Chr.3(-): 125725699-125820400 GRCh37]
ENST00000509064 [Chr.3(-): 125752488-125820398 GRCh37]
ENST00000509452 [Chr.3(-): 125786806-125789259 GRCh37]
ENST00000510651 [Chr.3(-): 125745227-125802966 GRCh37]
ENST00000512470 [Chr.3(-): 125745172-125802866 GRCh37]
ENST00000512557 [Chr.3(-): 125725206-125744633 GRCh37]
ENST00000513464 [Chr.3(-): 125745146-125787023 GRCh37]
ENST00000513723 [Chr.3(-): 125741665-125802966 GRCh37]
ENST00000514023 [Chr.3(-): 125743646-125802967 GRCh37]
ENST00000514333 [Chr.3(-): 125745255-125802966 GRCh37]
ENST00000514677 [Chr.3(-): 125735627-125803012 GRCh37]
ENST00000514891 [Chr.3(-): 125752447-125802765 GRCh37]
Annotation History:View Events (69)

GTEx Expression by Gene and Transcript

The heat map summarizes relative expression by tissue type at two levels of tissue detail, e.g., 'Brain' and 'Brain - Amygdala'. Choose among four calculated expression values, including mean and median RPKM values, and quantile normalized (QN) distributions of these values. (Note that differences between some distributions are subtle.) The coloring is relative to the mean of all displayed values. All values are log base 2. (See also PMT GTEx Expression Plotting.) Click on a transcript or tissue to resort the data.

Tissues:
Expression values:
No expression data exists for SLC41A3.

Variant Data

View all PMT variants for SLC41A3 on UCSC Genome Browser
Showing SNP features for transcript:   
1000 Genomes  

20141104 phase 3 variant call set of the 20130502 sequence freeze and alignments for SNPs and short indels (indels > 255 and structural variants are not included here). This variant set contains 2504 individuals from 26 populations (mouse over population column heading for population sizes).
Showing gene variants in regions defined by NCBI RefSeq exons, putative promoter, and PMT resequencing assays.
Note: Frequencies are calculated directly from reported genotypes and may vary from consensus frequencies reported by the 1000 Genomes project, which relied on additional data and the GATK tool Variant Quality Score Recalibrator.
dbSNP build 142.
Array availability: I - found on Illumina Human1M-Duo BeadChip (2011-04-21)  A - found on Affymetrix Genome-Wide SNP Array 6.0 (2011-06-21)  
Download the SNP table data as a tab-delimited file.

Transmembrane prediction: TOPO2 image is not available.