UCSF Pharmacogenetics of Membrane Transporters
Gene View
Common Name:SLC4A10
HGNC Symbol:SLC4A10
HGNC Description:solute carrier family 4, sodium bicarbonate transporter, member 10
HGNC ID:13811
Superfamily:SLC
Chromosome:Chr.2(+): 162480699-162841786 GRCh37
Location:2q24.2
OMIM:605556
OMIM Phenotype:None
Accessions:AB040457
Nucleotide RefSeq:NM_022058
Protein RefSeq:NP_071341
Entrez:57282
Ensembl:ENSG00000144290
Isoforms:7
Evidence:None
Tissues:high levels in the brain and at low levels in the pituitary, testis, kidney, and ileum
Type:protein-coding
Sets:0
PharmGKB ID:PA37810
HPRD ID:
Substrates:extracellular Na+ and HCO3
Trivial Names:NCBE, NBCn2
Transcripts:NM_022058.3 [Chr.2(+): 162480845-162841786 GRCh37]
NM_001178016.1 [Chr.2(+): 162480845-162841786 GRCh37]
NM_001178015.1 [Chr.2(+): 162480845-162841786 GRCh37]
XM_005246693.1 [Chr.2(+): 162480699-162841786 GRCh37]
XM_005246696.1 [Chr.2(+): 162480699-162762287 GRCh37]
XM_005246694.1 [Chr.2(+): 162480926-162841786 GRCh37]
XM_005246695.1 [Chr.2(+): 162480926-162841786 GRCh37]
ENST00000272716 [Chr.2(+): 162480936-162839755 GRCh37]
ENST00000375514 [Chr.2(+): 162480845-162841785 GRCh37]
ENST00000415876 [Chr.2(+): 162480848-162841792 GRCh37]
ENST00000421911 [Chr.2(+): 162480971-162839869 GRCh37]
ENST00000446228 [Chr.2(+): 162480971-162839869 GRCh37]
ENST00000446997 [Chr.2(+): 162480936-162841763 GRCh37]
ENST00000461456 [Chr.2(+): 162480928-162730431 GRCh37]
ENST00000481721 [Chr.2(+): 162480945-162696386 GRCh37]
ENST00000482861 [Chr.2(+): 162280843-162627545 GRCh37]
ENST00000493021 [Chr.2(+): 162480910-162757670 GRCh37]
ENST00000535165 [Chr.2(+): 162480908-162761339 GRCh37]
ENST00000605990 [Chr.2(+): 162280884-162481076 GRCh37]
ENST00000606386 [Chr.2(+): 162283964-162507800 GRCh37]
Annotation History:View Events (37)

GTEx Expression by Gene and Transcript

The heat map summarizes relative expression by tissue type at two levels of tissue detail, e.g., 'Brain' and 'Brain - Amygdala'. Choose among four calculated expression values, including mean and median RPKM values, and quantile normalized (QN) distributions of these values. (Note that differences between some distributions are subtle.) The coloring is relative to the mean of all displayed values. All values are log base 2. (See also PMT GTEx Expression Plotting.) Click on a transcript or tissue to resort the data.

Tissues:
Expression values:
No expression data exists for SLC4A10.

Variant Data

View all PMT variants for SLC4A10 on UCSC Genome Browser
Showing SNP features for transcript:   
1000 Genomes  

20141104 phase 3 variant call set of the 20130502 sequence freeze and alignments for SNPs and short indels (indels > 255 and structural variants are not included here). This variant set contains 2504 individuals from 26 populations (mouse over population column heading for population sizes).
Showing gene variants in regions defined by NCBI RefSeq exons, putative promoter, and PMT resequencing assays.
Note: Frequencies are calculated directly from reported genotypes and may vary from consensus frequencies reported by the 1000 Genomes project, which relied on additional data and the GATK tool Variant Quality Score Recalibrator.
dbSNP build 142.
Array availability: I - found on Illumina Human1M-Duo BeadChip (2011-04-21)  A - found on Affymetrix Genome-Wide SNP Array 6.0 (2011-06-21)  
Download the SNP table data as a tab-delimited file.

Transmembrane prediction: TOPO2 image is not available.