UCSF Pharmacogenetics of Membrane Transporters
Gene View
Common Name:None
HGNC Symbol:SLC8B1
HGNC Description:solute carrier family 8 (sodium/lithium/calcium exchanger), member B1
HGNC ID:26175
Superfamily:SLC
Chromosome:Chr.12(-): 113736571-113772934 GRCh37
Location:12q24.13
OMIM:609841
OMIM Phenotype:None
Accessions:None
Nucleotide RefSeq:XM_005253939
Protein RefSeq:XP_005253996
Entrez:80024
Ensembl:ENSG00000089060
Isoforms:3
Evidence:None
Tissues:None
Type:protein-coding
Sets:None
PharmGKB ID:
HPRD ID:15354
Substrates:None
Trivial Names:NCLX, NCKX6, SLC24A6
Transcripts:XM_005253939.1 [Chr.12(-): 113736571-113772934 GRCh37]
NM_024959.2 [Chr.12(-): 113736571-113772925 GRCh37]
XM_005253940.1 [Chr.12(-): 113736571-113756876 GRCh37]
ENST00000202831 [Chr.12(-): 113736572-113772925 GRCh37]
ENST00000546737 [Chr.12(-): 113737582-113770752 GRCh37]
ENST00000548186 [Chr.12(-): 113758681-113772924 GRCh37]
ENST00000548477 [Chr.12(-): 113757779-113772948 GRCh37]
ENST00000548518 [Chr.12(-): 113772477-113797271 GRCh37]
ENST00000549069 [Chr.12(-): 113737137-113744649 GRCh37]
ENST00000549181 [Chr.12(-): 113758136-113772946 GRCh37]
ENST00000549372 [Chr.12(-): 113759001-113797298 GRCh37]
ENST00000549605 [Chr.12(-): 113758166-113772927 GRCh37]
ENST00000550047 [Chr.12(-): 113736586-113746648 GRCh37]
ENST00000550672 [Chr.12(-): 113736582-113758683 GRCh37]
ENST00000551230 [Chr.12(-): 113753147-113772912 GRCh37]
ENST00000552014 [Chr.12(-): 113736564-113772835 GRCh37]
ENST00000552565 [Chr.12(-): 113736578-113757130 GRCh37]
ENST00000552613 [Chr.12(-): 113758655-113772418 GRCh37]
ENST00000553238 [Chr.12(-): 113745605-113772638 GRCh37]

GTEx Expression by Gene and Transcript

The heat map summarizes relative expression by tissue type at two levels of tissue detail, e.g., 'Brain' and 'Brain - Amygdala'. Choose among four calculated expression values, including mean and median RPKM values, and quantile normalized (QN) distributions of these values. (Note that differences between some distributions are subtle.) The coloring is relative to the mean of all displayed values. All values are log base 2. (See also PMT GTEx Expression Plotting.) Click on a transcript or tissue to resort the data.

Tissues:
Expression values:
No expression data exists for SLC8B1.

Variant Data

View all PMT variants for SLC8B1 on UCSC Genome Browser
Showing SNP features for transcript:   
1000 Genomes  

20141104 phase 3 variant call set of the 20130502 sequence freeze and alignments for SNPs and short indels (indels > 255 and structural variants are not included here). This variant set contains 2504 individuals from 26 populations (mouse over population column heading for population sizes).
Showing gene variants in regions defined by NCBI RefSeq exons, putative promoter, and PMT resequencing assays.
Note: Frequencies are calculated directly from reported genotypes and may vary from consensus frequencies reported by the 1000 Genomes project, which relied on additional data and the GATK tool Variant Quality Score Recalibrator.
dbSNP build 142.
Array availability: I - found on Illumina Human1M-Duo BeadChip (2011-04-21)  A - found on Affymetrix Genome-Wide SNP Array 6.0 (2011-06-21)  
Download the SNP table data as a tab-delimited file.

Transmembrane prediction: TOPO2 image is not available.