UCSF Pharmacogenetics of Membrane Transporters
Gene View
Common Name:SLC9A11
HGNC Symbol:SLC9C2
HGNC Description:solute carrier family 9, member C2 (putative)
HGNC ID:28664
Superfamily:SLC
Chromosome:Chr.1(-): 173469604-173572233 GRCh37
Location:1q25.1
OMIM:
OMIM Phenotype:None
Accessions:BC042592
Nucleotide RefSeq:NM_178527
Protein RefSeq:NP_848622
Entrez:284525
Ensembl:ENSG00000162753
Isoforms:1
Evidence:None
Tissues:None
Type:protein-coding
Sets:0
PharmGKB ID:PA134865165
HPRD ID:15398
Substrates:None
Trivial Names:SLC9A11, RP3-436N22.2
Transcripts:NM_178527.3 [Chr.1(-): 173469604-173572233 GRCh37]
ENST00000367714 [Chr.1(-): 173469603-173572233 GRCh37]
ENST00000466087 [Chr.1(-): 173469609-173545890 GRCh37]
ENST00000476568 [Chr.1(-): 173567045-173570891 GRCh37]
ENST00000479367 [Chr.1(-): 173565557-173572192 GRCh37]
ENST00000536496 [Chr.1(-): 173494015-173572189 GRCh37]

GTEx Expression by Gene and Transcript

The heat map summarizes relative expression by tissue type at two levels of tissue detail, e.g., 'Brain' and 'Brain - Amygdala'. Choose among four calculated expression values, including mean and median RPKM values, and quantile normalized (QN) distributions of these values. (Note that differences between some distributions are subtle.) The coloring is relative to the mean of all displayed values. All values are log base 2. (See also PMT GTEx Expression Plotting.) Click on a transcript or tissue to resort the data.

Tissues:
Expression values:
No expression data exists for SLC9C2.

Variant Data

View all PMT variants for SLC9C2 on UCSC Genome Browser
Showing SNP features for transcript: NM_178527  
1000 Genomes  

20141104 phase 3 variant call set of the 20130502 sequence freeze and alignments for SNPs and short indels (indels > 255 and structural variants are not included here). This variant set contains 2504 individuals from 26 populations (mouse over population column heading for population sizes).
Showing gene variants in regions defined by NCBI RefSeq exons, putative promoter, and PMT resequencing assays.
Note: Frequencies are calculated directly from reported genotypes and may vary from consensus frequencies reported by the 1000 Genomes project, which relied on additional data and the GATK tool Variant Quality Score Recalibrator.
dbSNP build 142.
Array availability: I - found on Illumina Human1M-Duo BeadChip (2011-04-21)  A - found on Affymetrix Genome-Wide SNP Array 6.0 (2011-06-21)  
Download the SNP table data as a tab-delimited file.

Transmembrane prediction: TOPO2 image is not available.